New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | = 3577555 | NA (NA) | 94 (1.340) | 43/134 | 0.1 | 100% | intergenic (+15/‑1) | insB1/yrhA | IS1 transposase B/pseudogene, interrupted by IS1E |
? | CP009273 | 4232204 = | 0 (0.000) | intergenic (‑22/+350) | xylE/malG | D‑xylose transporter/maltose transporter subunit |
AAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAAT > CP009273/4232139‑4232271 | tgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTg > 1:4396322‑M2/66‑68 (MQ=255) tgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTg > 1:1920851‑M2/66‑68 (MQ=255) gcattacaaagtcatcgggcattatctgaacataaaacactatcaattagttggagtcattaccCTGa < 1:98537‑M2/4‑1 (MQ=255) gcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGa < 1:3112157‑M2/4‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGGTc > 1:4193391‑M2/63‑68 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATc < 1:5750060‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATc < 1:4809871‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATc < 1:4775115‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATc < 1:1934799‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATc > 1:3084750‑M2/63‑68 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATc < 1:3340809‑M2/6‑1 (MQ=255) gacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCtt < 1:5540711‑M2/8‑1 (MQ=255) aaggtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTa > 1:3728215‑M2/58‑68 (MQ=255) gtcatcgggcattatctgaacataaatcactatcaataagttggagtcattaccCTGATCTTTTATCa > 1:3123237‑M2/55‑68 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCa > 1:4787040‑M2/55‑68 (MQ=255) catcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGt < 1:2373655‑M2/16‑1 (MQ=255) catcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGt < 1:590558‑M2/16‑1 (MQ=255) catcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGt < 1:5608881‑M2/16‑1 (MQ=255) catcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGt < 1:1629553‑M2/16‑1 (MQ=255) catcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGt < 1:5298942‑M2/16‑1 (MQ=255) cgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCa < 1:4930375‑M2/19‑1 (MQ=255) ggcattatccgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCAtt > 1:1687276‑M2/48‑68 (MQ=255) cattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGa < 1:1387183‑M2/23‑1 (MQ=255) cataatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGa > 1:1340796‑M2/46‑68 (MQ=255) attatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGAt > 1:4863959‑M2/45‑68 (MQ=255) attatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGAt < 1:3756286‑M2/24‑1 (MQ=255) attatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGAt < 1:4198268‑M2/24‑1 (MQ=255) attatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGAt < 1:5100019‑M2/24‑1 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTg > 1:4164647‑M2/41‑68 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTg > 1:2292295‑M2/41‑68 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTg > 1:169831‑M2/41‑68 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTg > 1:2929527‑M2/41‑68 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTg > 1:1960650‑M2/41‑68 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTg > 1:3088655‑M2/41‑68 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTAACAGTGCATTGATGTTg > 1:725359‑M2/41‑68 (MQ=255) aacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAAt > 1:1773875‑M2/37‑68 (MQ=255) acataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAAtt < 1:24920‑M2/33‑1 (MQ=255) acataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAAtt > 1:929014‑M2/36‑68 (MQ=255) acataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAAtt < 1:874381‑M2/33‑1 (MQ=255) acataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAAtt < 1:1969346‑M2/33‑1 (MQ=255) acataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAAtt < 1:5584135‑M2/33‑1 (MQ=255) ataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGt > 1:1803010‑M2/34‑68 (MQ=255) ataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGt < 1:6104473‑M2/35‑1 (MQ=255) ataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGt < 1:3254714‑M2/35‑1 (MQ=255) ataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGt > 1:3813248‑M2/34‑68 (MQ=255) aaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAg < 1:2608756‑M2/38‑1 (MQ=255) acactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGATTTGTCAGGc > 1:2900092‑M2/29‑68 (MQ=255) acactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGc > 1:4779738‑M2/29‑68 (MQ=255) acactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGc > 1:3570389‑M2/29‑68 (MQ=255) actatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAg < 1:4981279‑M2/42‑1 (MQ=255) actatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAg < 1:1160174‑M2/42‑1 (MQ=255) actatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAg > 1:1381614‑M2/27‑68 (MQ=255) actatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAg < 1:214908‑M2/42‑1 (MQ=255) ctatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGt < 1:3745281‑M2/43‑1 (MQ=255) ctatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGt > 1:4622429‑M2/26‑68 (MQ=255) tatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGtt < 1:295238‑M2/44‑1 (MQ=255) atcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTa > 1:1632384‑M2/24‑68 (MQ=255) atcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTa > 1:1831195‑M2/24‑68 (MQ=255) tcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTaa > 1:320946‑M2/23‑68 (MQ=255) ataagtgggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGc < 1:5630266‑M2/49‑1 (MQ=255) agttggagtcattaccCTGGTCTTTTATCAGTGCGTTGATGTTGGAATTGTCAGGCAGTTAAGGCAAt > 1:1197638‑M2/17‑68 (MQ=255) agttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTTAGGCAAt > 1:5109921‑M2/17‑68 (MQ=255) agttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAt > 1:4345025‑M2/17‑68 (MQ=255) agttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAt > 1:2270097‑M2/17‑68 (MQ=255) agttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAt > 1:2761692‑M2/17‑68 (MQ=255) agttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAt > 1:30344‑M2/17‑68 (MQ=255) agttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAt > 1:5812178‑M2/17‑68 (MQ=255) agttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGACAGGCAGTTAAGGcaaa > 1:857053‑M2/17‑67 (MQ=255) agttggagtcattaccCTGATCTTTAATCAGTGCAATGATGTTGGAATTGTCAGGCAGTTAAGGCAAt < 1:2490673‑M2/52‑1 (MQ=255) gttggaggccttaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAtt < 1:2057767‑M2/53‑1 (MQ=255) ttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGATTTGTCAGGCAGTTAAGGCAATTa > 1:4991400‑M2/15‑68 (MQ=255) ggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATc > 1:1801434‑M2/13‑68 (MQ=255) attcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAt < 1:1784474‑M2/58‑1 (MQ=255) agtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGTATTGTCAGGCAGTTAAGGCAATTATCAt < 1:3825435‑M2/58‑1 (MQ=255) agtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAt > 1:1110674‑M2/11‑68 (MQ=255) agtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAt > 1:5941340‑M2/11‑68 (MQ=255) agtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAt < 1:3600638‑M2/58‑1 (MQ=255) gtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAtt > 1:4134145‑M2/10‑68 (MQ=255) gtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAtt > 1:2894648‑M2/10‑68 (MQ=255) tcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAttt > 1:5123631‑M2/9‑68 (MQ=255) ttaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAtttttt > 1:693875‑M2/6‑68 (MQ=255) taccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTa < 1:4814715‑M2/64‑1 (MQ=255) ccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACa > 1:4457061‑M2/3‑68 (MQ=255) ccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACa < 1:5502445‑M2/66‑1 (MQ=255) ccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACa > 1:6081394‑M2/3‑68 (MQ=255) ccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACa > 1:4124395‑M2/3‑68 (MQ=255) ccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTATTTACa > 1:3646826‑M2/3‑68 (MQ=255) cCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTTCaa > 1:4137428‑M2/2‑68 (MQ=255) cCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACaa > 1:2015166‑M2/2‑68 (MQ=255) cCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACaa > 1:4282488‑M2/2‑68 (MQ=255) cCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACaa > 1:1790277‑M2/2‑68 (MQ=255) cCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACaa > 1:3643433‑M2/2‑68 (MQ=255) cCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACaa > 1:2821436‑M2/2‑68 (MQ=255) cCTGATCTTATATCAGTGCAGTGATGTTGGAATTGTCAGGCAGTTAAGGCATTTATCATTTTTTACaa > 1:233897‑M2/2‑68 (MQ=255) cTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAAt < 1:2894787/68‑1 (MQ=255) cTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAAt < 1:3858541/68‑1 (MQ=255) cTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAAt > 1:3747042/1‑68 (MQ=255) | AAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAAT > CP009273/4232139‑4232271 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |