| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360232 = | 89 (1.270) | 9 (0.000) | 4/122 | 4.3 | 1.6% | intergenic (‑166/+429) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | Exported | = 2325 | 1007 (0.060) | intergenic (+91/–) | fdh/– | formate dehydrogenase from Pseudomonas sp. 101 with an N‑terminal his‑tag/– | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCT > CP009273/360183‑360299 | cgtaTTTGTCCTACTCAGGAGAGCGATCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCg < 1:3900626/65‑1 (MQ=0) ggttttGTCCTACTCAGGAGTGCGTTCACCGACAATCAACAGTTAAAACGAAAGGCCCAGTCTTTCGa < 1:4152331/65‑1 (MQ=1) ggttttGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGa < 1:2643568/65‑1 (MQ=1) ggttttGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGa < 1:6024344/65‑1 (MQ=1) ggctttGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGa < 1:2482404/65‑1 (MQ=1) gagttGTCCTACTCAGGAGAGCGATCACCGACAAACAACAGAAAAAACCACAGGCCCAGTCTTTCGAc < 1:5852193/65‑1 (MQ=1) tggccTACTCAGGAGAGCGTTCACCGACAAACAACCGATACAACGAAAGGCCCAGTCTTTCGACTGAg < 1:2454581/65‑1 (MQ=1) tggccTACTCAGGAGAGCGTGCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAg < 1:5723566/65‑1 (MQ=0) tgccctcctCAGGAGAGCGTACACCGACAAACAACAGATAAAACGAACGCCCCAGGCTTTCGACTGAg < 1:2305599/65‑1 (MQ=1) tgaccTACTCAGGAGAGCGTACACCGACAAACCACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAg < 1:1641062/65‑1 (MQ=1) acgcAGGAGAGCGTTCCCCGACAACCAACAGATAAAACGAACGGCCCAGTCTTTCGACTGAGCCTTTc < 1:5518702/65‑1 (MQ=1) acacAGGAGAGCGATCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTc < 1:3921953/65‑1 (MQ=0) acacAGGACAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCCGTCTTTCGACTGAGCCTTTc < 1:4399143/65‑1 (MQ=1) ctaaGGATAGCGATCACCGACAAACATAATATAAAACGATAGGACCAGTCTTTCGACTGAGCCTTTCg < 1:1213406/65‑1 (MQ=1) tctggAGAGCGTTCTCCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTGCGt > 1:2217269/4‑68 (MQ=1) tctggAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGt > 1:5754456/4‑68 (MQ=1) tctggAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGCCCCAGTCTTTCGACTGAGCCTTTCGt < 1:5110927/65‑1 (MQ=0) tcgggAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGt > 1:4597916/4‑68 (MQ=1) tccggAGAGCGTTCACCGACACCCACCAGATAAAACGAAAGGCCCCGTCTTTCGACTGAGCCTTTCGt < 1:2161906/65‑1 (MQ=1) tccggAGAGCGTTCACCGACAAACAACAGATAAAACGAACGGCCCAGTCTTTCGACTGAGCCTTTCGt < 1:707432/65‑1 (MQ=0) tccggAGAGCGTTCACCGACAAACAACACAAAAAACGACAGGCCCAGGCTTTCGACTGAGCCTTTCGt < 1:5888924/65‑1 (MQ=1) tccggAGAGCGTGCACCGACAAACAACAGATAACACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGt < 1:2428795/65‑1 (MQ=1) tccggAGAGCGGTCACCGACAAACAACAGATAAACCGAACGGCCCAGTCTTTCGACTGAGCCTTTCGt < 1:4410806/65‑1 (MQ=1) tccggAGAGCGGTCACCCACACACAACATATAAACCGAAAGGCCCTGTCATTGGACTGAGCCTTTCGt < 1:3324899/65‑1 (MQ=0) tccggAGAGCGATCACCGACAAACAACAGATAAAACGAAAGGCCCACTCTTTCGACTGAGCCTTTCGt < 1:3352749/65‑1 (MQ=1) tccggACAGCGTTCACCGACAAACACCCGATAAAACGCACGCCCCAGTCTTTCGACTGAGCCTTTCGt < 1:2716473/65‑1 (MQ=1) cacgagaGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtt < 1:2080208/65‑1 (MQ=1) ggtgagCGTTCACCGACAAACAACAGATATAACGAAAGGCCCAGTCTTTCGACTGAGCGATTCGtttt > 1:4958645/4‑68 (MQ=1) ggggagCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTGCGACTGAGCCTTTCGtttt > 1:5435344/4‑68 (MQ=0) ggcgagCGTGCACCGACAAACAACAGATAACACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtttt < 1:4493167/65‑1 (MQ=1) agcgCGTTCACCGACAAACAACAGCAAACACGAACGGCCCTGTCTTTCGTCTGAGCCTTTCGTTTTAt < 1:1156028/65‑1 (MQ=1) agcgCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt > 1:5301501/4‑68 (MQ=1) agcgCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt < 1:5603667/65‑1 (MQ=1) agcgCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt > 1:5329000/4‑68 (MQ=1) agcgCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt < 1:2724637/65‑1 (MQ=1) agcgCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt > 1:2245207/4‑68 (MQ=1) agcgCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt < 1:5894257/65‑1 (MQ=1) agcgCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt > 1:1966940/4‑68 (MQ=1) agcgCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt < 1:1568940/65‑1 (MQ=1) agcgCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt > 1:3132102/4‑68 (MQ=1) agcgCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTGTCGTTTTAt > 1:5425096/4‑68 (MQ=0) agcgCGTTCACCGACAAACAACAGATAAAACGAAACGCCCACTCTTTCGACTGAGCCTTTCGTTTTAt < 1:5640524/65‑1 (MQ=1) agcgCGGTCACCGACAAACAACAGATAAAACGTAAGTCCCAGTCTTTCGTCTGAGCCTTTCGTTTTAt < 1:5491790/65‑1 (MQ=1) gaccGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAtt < 1:2941145/65‑1 (MQ=1) gaccGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAtt < 1:2689138/65‑1 (MQ=1) agtgTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt > 1:1580362/4‑68 (MQ=1) cggtCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGa < 1:5883053/65‑1 (MQ=1) cggtCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGa < 1:443665/65‑1 (MQ=1) cgctCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGa < 1:1351410/65‑1 (MQ=1) cgatCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGa < 1:1067530/65‑1 (MQ=1) gtgcACCGACAAACAACAGATAAAACGAACGGCCCAGTCGTTCGACTGAGCCTTTCGTTTTATTTGAt < 1:5412749/65‑1 (MQ=1) tctccGACAAACAACAGATAAAACCAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGc < 1:3220562/65‑1 (MQ=0) tccccGCCAAACAACAGATAAAACGAAACGCCCTGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGc < 1:4195194/65‑1 (MQ=1) catcGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGcc < 1:2658632/65‑1 (MQ=1) caacGACAAACAACATATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGTTGcc < 1:5681778/65‑1 (MQ=1) acagACAAACAAAAGAAAAAACGAAAGGCCCAGGCTTTCGACTGAGCCATTCGTTTTATTTGATGCCt < 1:5019399/65‑1 (MQ=1) gACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTggg < 1:5904512/68‑1 (MQ=31) gACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTggg < 1:659954/68‑1 (MQ=31) cacaaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTggg < 1:3147828/67‑1 (MQ=14) acaaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgggg > 1:5661824/1‑68 (MQ=33) acaaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgggg > 1:2986964/1‑68 (MQ=33) tttacatcaGATATCACGAACCGCCATGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGggga < 1:270723/65‑1 (MQ=11) cacacaaccGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGggga < 1:4134868/65‑1 (MQ=255) caaacacCAGATAAAACGAAAGGCCCTGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGggga < 1:5564195/68‑1 (MQ=255) caaacaaCAGATAAATCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGggga < 1:1081657/68‑1 (MQ=25) caaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGggga < 1:3462499/68‑1 (MQ=35) ccacatcaGATAAAACGAAAGGCCATGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaa < 1:4936206/66‑1 (MQ=11) aaaccaCAGATAAAACGCAAGGCCCCGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaa < 1:5006526/68‑1 (MQ=11) aaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaa < 1:5765837/68‑1 (MQ=37) aaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaa > 1:3005286/1‑68 (MQ=37) aaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaa > 1:5290351/1‑68 (MQ=37) aaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaa < 1:3300108/68‑1 (MQ=37) aaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaa < 1:3309119/68‑1 (MQ=37) aaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaa < 1:4330517/68‑1 (MQ=37) aaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaa < 1:3913481/68‑1 (MQ=37) aacaacAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaat < 1:983148/68‑1 (MQ=39) aacaacAGATAAAACGAAAGGCCCAGGCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaat < 1:3289903/68‑1 (MQ=255) accgATAACACGAAACGCCCCTTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattggg < 1:1820337/65‑1 (MQ=14) acaGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattggg < 1:1146081/68‑1 (MQ=255) acaGATAAAACGAAACGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattggg < 1:4863306/68‑1 (MQ=255) caGATAAAACGAAATGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattggga < 1:5869379/68‑1 (MQ=255) caGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattggga < 1:954826/68‑1 (MQ=255) caGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGGTTTATTTGATGCCTGgggaattggga > 1:3367151/1‑68 (MQ=255) aGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattgggaa < 1:6028925/68‑1 (MQ=255) aGATAAAACGAAAGGCCCACTCTTTCGACAGAGCCTTTCGTTTTATTTTATGCCTGgggaattgggaa > 1:2466519/1‑68 (MQ=17) tAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGaatta > 1:4468818/1‑68 (MQ=255) aacaCGAAAGGCCCATTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGaattaa < 1:2879151/65‑1 (MQ=255) aCGAAAGGCCCAGTCTTTCGAGTGAGCCTGTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTc > 1:2216100/1‑68 (MQ=255) aCGAAAGGCCCAGTCTTTCGACTGAGCCGTTCGTTTTATTTGATGCCTGGGGAATTGGGtattaattg > 1:4435602/1‑67 (MQ=17) cGAAAGGCCCAGTCTTTCGACTGCGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCt > 1:4502725/1‑68 (MQ=255) cGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCt > 1:1199767/1‑68 (MQ=255) cGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCt > 1:3071969/1‑68 (MQ=255) cGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCt > 1:852320/1‑68 (MQ=255) | CGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCT > CP009273/360183‑360299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |