| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360232 = | 89 (1.270) | 9 (0.000) | 4/122 | 4.3 | 1.6% | intergenic (‑166/+429) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | Exported | = 2325 | 1007 (0.060) | intergenic (+91/–) | fdh/– | formate dehydrogenase from Pseudomonas sp. 101 with an N‑terminal his‑tag/– | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 3835 total aligned reads displayed.
GTCGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGG > Exported/2257‑2364 | ctCGACCTGCAGCCC‑GGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:1249443/67‑1 (MQ=255) tCGACCTGCAGCCCGGGGGATCCCATGTTACGCGTGCTAGAGGCATCAAATAAAACGAAAGACTCAGt < 1:4451354/68‑1 (MQ=255) tCGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:798691/68‑1 (MQ=39) tCGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:4755443/68‑1 (MQ=39) tCGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:3101359/68‑1 (MQ=39) tCGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:4597079/68‑1 (MQ=39) tCGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:2071647/68‑1 (MQ=39) tCGACCAGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:582522/68‑1 (MQ=255) gcGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:300423/67‑1 (MQ=37) gcGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:745532/67‑1 (MQ=37) gcGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:3948970/67‑1 (MQ=37) gcGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:2138682/67‑1 (MQ=37) gcGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:5885059/67‑1 (MQ=37) gcGACCTGCAGCCCGGGGGATCCCATGGTACGCGGGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:6036617/67‑1 (MQ=255) ggACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCTGTc < 1:5521268/67‑1 (MQ=255) cGACGTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:870457/68‑1 (MQ=18) cGACCTTCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2191615/68‑1 (MQ=255) cGACCTGGAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1958841/68‑1 (MQ=255) cGACCTGCTGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAATTAAAACGAAAGGCTCAGTc < 1:1492579/68‑1 (MQ=255) cGACCTGCTGCCCGGGGGATCACATGGTACGCGTGCTATAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4242567/68‑1 (MQ=11) cGACCTGCAGCCCTGGGGATCCCATGGTACGCGTGCTAGTGGCATCAAATAAAACGACAGGCTCAGTc < 1:3050434/68‑1 (MQ=11) cGACCTGCAGCCCGGGGGATCGCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1911668/68‑1 (MQ=255) cGACCTGCAGCCCGGGGGATCCCATTGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:6098279/68‑1 (MQ=255) cGACCTGCAGCCCGGGGGATCCCATGGTTCGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4401691/68‑1 (MQ=255) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGTCATCAAATAAAACGAAAGGCTCAGTc < 1:1673497/68‑1 (MQ=255) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCTAATAAAACGAAAGGCTCAGTc < 1:5035770/68‑1 (MQ=255) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAACCGAAAGGCTCAGTc < 1:5077453/68‑1 (MQ=255) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4293784/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4003490/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3910775/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4641819/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3824646/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4109551/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1063900/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:377322/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:470078/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:497143/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5182040/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5231408/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5300044/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5343131/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5407885/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5568592/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5618261/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5677801/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5772499/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5989738/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:6145799/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:6219435/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:676181/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:287427/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:201371/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2252042/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2311370/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2375750/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1870051/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2475968/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2550259/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2618690/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2666761/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1787187/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2716175/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2757920/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1731801/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1606241/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2935716/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1295942/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3726100/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3603167/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:354061/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3502502/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1105559/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3153931/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1353153/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1454340/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1549829/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3189031/68‑1 (MQ=37) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATAAAATAAAACGAAAGGCTCAGTc < 1:4813172/68‑1 (MQ=255) cGACCTGCAGCCCGGGGGATCCCATGGTACGCGGGCTAGAGGCATCAAATAAAACGAAAGGCGCAGTc < 1:4165856/68‑1 (MQ=255) cGACCTGCAGCCCGGGGGATCCAATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4902978/68‑1 (MQ=255) cGACCTGCAGCCAGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1147927/68‑1 (MQ=255) cGACCTGCACCCCGGGGGATCCCATGGTACGCGTGCTATAGGCATCAAATAAAACGAAACGCTCAGTc < 1:4532351/68‑1 (MQ=11) ccTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGaa > 1:1002369/1‑68 (MQ=31) ccTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGaa > 1:5722493/1‑68 (MQ=31) ccTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGaa > 1:940352/1‑68 (MQ=31) tGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgttt > 1:243182/1‑68 (MQ=31) tGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgttt > 1:5937489/1‑68 (MQ=31) tGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgttt > 1:3282183/1‑68 (MQ=31) tGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgttt > 1:3340680/1‑68 (MQ=31) gCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgtttg > 1:1407571/1‑68 (MQ=33) cTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgtttgt < 1:5464675/68‑1 (MQ=35) cTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgtttgt > 1:5132212/1‑68 (MQ=35) cTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgtttgt > 1:3387851/1‑68 (MQ=35) cTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgtttgt < 1:3661443/68‑1 (MQ=35) tAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTc > 1:3234815/1‑68 (MQ=35) agagGCATCAAATAAAACGAAAGGCTCAGTCGAAAGCCTGGGCCTTTCGTTTTATCTGTTGTTTGTCg > 1:3450607/1‑68 (MQ=18) agagGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCg > 1:4862497/1‑68 (MQ=33) gagGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCgg < 1:281755/68‑1 (MQ=31) gagGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCgg < 1:4351135/68‑1 (MQ=31) gagGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCgg < 1:4061591/68‑1 (MQ=31) | GTCGACCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGG > Exported/2257‑2364 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |