| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4532499 = | 33 (0.470) | 65 (1.070) | 33/116 | 0.1 | 74.9% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 15 (0.250) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
Only 100 of 196 total aligned reads displayed.
AAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAA > CP009273/4532432‑4532566 | aaaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAT < 1:3708893‑M1/68‑1 (MQ=255)aaaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAT < 1:3028154‑M1/68‑1 (MQ=255) acactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacattt < 1:3349252‑M1/2‑1 (MQ=255) acactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacattt < 1:2836823‑M1/2‑1 (MQ=255) cactttgttttgtaaacgagtttgactgcaaacactgcacagttttcccccaaaagatgaaacatTTg < 1:2135290‑M1/3‑1 (MQ=255) actttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgg < 1:1436577‑M1/4‑1 (MQ=255) aagagaagagGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAACAAATAAATACAAGACAATTGGG < 1:3323768‑M1/68‑1 (MQ=255) ctttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg > 1:3650326‑M1/64‑68 (MQ=255) ctttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg < 1:4794594‑M1/5‑1 (MQ=255) agagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGG > 1:5315794‑M1/1‑68 (MQ=255) ttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGc < 1:1993500‑M1/7‑1 (MQ=255) ttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGc < 1:4916649‑M1/7‑1 (MQ=255) ttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGc < 1:6124841‑M1/7‑1 (MQ=255) ttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTAGGGc < 1:4608855‑M1/7‑1 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAATTAAATACAAGACAATTGGGGCCAt < 1:4506288‑M1/68‑2 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:478986/68‑1 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAt < 1:4174548‑M1/68‑2 (MQ=255) tttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaaa < 1:379252‑M1/11‑1 (MQ=255) tttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaaa < 1:3572432‑M1/11‑1 (MQ=255) ggTTTGATTTAACTTATTGATATTAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt > 1:2619185‑M1/1‑64 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:5978197/68‑1 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:2716872/68‑1 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:4278573/68‑1 (MQ=255) taaactagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGt > 1:4398802‑M1/54‑68 (MQ=255) taaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGt > 1:3986403‑M1/54‑68 (MQ=255) taaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGt > 1:256390‑M1/54‑68 (MQ=255) taaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGt > 1:5114544‑M1/54‑68 (MQ=255) taaacgagttagacagccaacactgcacagatatcccccaaaagatgaaacatTTGGGGCCAAACTGt > 1:3455357‑M1/54‑68 (MQ=255) aacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTcc > 1:1003381‑M1/52‑68 (MQ=255) gATTTAACTTCTTGATAATAAAGTTAAAAAAACAAATAAATACAAGAAAATTGGGGCCAttttgactc < 1:2745664‑M1/68‑10 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactc < 1:2753741‑M1/68‑10 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat > 1:634303‑M1/1‑57 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat < 1:615555‑M1/68‑12 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat > 1:5748929‑M1/1‑57 (MQ=255) gagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCata > 1:5931860‑M1/49‑68 (MQ=255) ttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat < 1:3897105/68‑1 (MQ=255) ttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat < 1:2956345/68‑1 (MQ=255) taaaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat < 1:4433618/66‑1 (MQ=255) agattgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCatat > 1:5610239‑M1/48‑68 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcataga < 1:3738049‑M1/68‑15 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcataga < 1:3727535‑M1/68‑15 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcataga < 1:132929‑M1/68‑15 (MQ=255) aCTTTTTGATAATAAAGTTTAAATAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCat < 1:1113738/68‑1 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAATTTAAAACAAGACATTTGGGGCCAttatgactcatagagg > 1:2672370‑M1/1‑52 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagagg > 1:3075134‑M1/1‑52 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata < 1:1954883/68‑1 (MQ=255) ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagagga > 1:5293010‑M1/1‑51 (MQ=255) actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaa > 1:3817678‑M1/42‑68 (MQ=255) actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaa > 1:1013498‑M1/42‑68 (MQ=255) actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaa < 1:2371190‑M1/27‑1 (MQ=255) ctgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaat < 1:3741663‑M1/28‑1 (MQ=255) ctgccaacactgcacagtttacccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaat < 1:592276‑M1/28‑1 (MQ=255) tGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagc > 1:1200296‑M1/1‑47 (MQ=255) tGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaataa > 1:5215906/1‑68 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcat > 1:1504621‑M1/1‑45 (MQ=255) actgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACg < 1:889900‑M1/36‑1 (MQ=255) ctgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt < 1:3261417‑M1/37‑1 (MQ=255) ctgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt < 1:1379357‑M1/37‑1 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgg < 1:2399778‑M1/68‑29 (MQ=255) tgcacagatttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa > 1:6087817‑M1/31‑68 (MQ=255) aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggac > 1:1152885‑M1/1‑38 (MQ=255) aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggac > 1:2206571‑M1/1‑38 (MQ=255) aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGACCATATCATAAATAAGTTACGTAt > 1:937761/1‑68 (MQ=255) gTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt > 1:5725638/1‑68 (MQ=255) cacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt > 1:5912111‑M1/29‑68 (MQ=255) tAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaa < 1:2309329‑M1/68‑34 (MQ=255) tAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaa < 1:4256261‑M1/68‑34 (MQ=255) tAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaa < 1:5363341‑M1/68‑34 (MQ=255) gttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttttt < 1:6016424‑M1/44‑1 (MQ=255) aaaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaact < 1:3932021‑M1/68‑36 (MQ=255) tttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct < 1:221407‑M1/46‑1 (MQ=255) aaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttt < 1:1748918‑M1/68‑39 (MQ=255) ccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg > 1:4271708‑M1/19‑68 (MQ=255) cccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATATATAAGTTACGTATTTTTTCTCAAGc < 1:2498676‑M1/51‑1 (MQ=255) cccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc < 1:2226287‑M1/51‑1 (MQ=255) cccaaaagaagaaacaaTTGCCGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc > 1:2414555‑M1/18‑68 (MQ=255) aaataaatACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc < 1:1877512/68‑1 (MQ=255) aaataaatACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc < 1:2076238/68‑1 (MQ=255) ccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCa > 1:1091247‑M1/17‑68 (MQ=255) aataaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagt < 1:785412‑M1/68‑44 (MQ=255) aataaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagt < 1:4755056‑M1/68‑44 (MQ=255) aataaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagt < 1:5838551‑M1/68‑44 (MQ=255) aataaataCAAGACAATTGGGGCCAttttgactcatagaggaaaccatcgcggacaaactttttcagc < 1:521969‑M1/68‑44 (MQ=255) aataaataCAAGACAATTGGGGCCAatttgactcatagaggaaagcatcgcggacaaactttttcagt < 1:4692140‑M1/68‑44 (MQ=255) taaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagttt < 1:4099116‑M1/68‑46 (MQ=255) taaaaaCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTATATCTCAAGCATa < 1:2465199/68‑1 (MQ=255) ataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatt > 1:3698387‑M1/1‑20 (MQ=255) aCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttg > 1:5340539‑M1/1‑18 (MQ=255) aCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttg > 1:6183450‑M1/1‑18 (MQ=255) aCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttg > 1:1713732‑M1/1‑18 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAat > 1:3136274/1‑68 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAat > 1:807593/1‑68 (MQ=255) gACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttgg < 1:5010893‑M1/68‑55 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc > 1:1537422‑M1/1‑13 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc > 1:5501250‑M1/1‑13 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc < 1:2798505‑M1/68‑56 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaa > 1:4371188/1‑68 (MQ=255) atTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa < 1:1318510‑M1/66‑1 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggctta > 1:3187496‑M1/1‑10 (MQ=255) TTGGGGCCAAACTGTCCATATCATAAAGAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa < 1:2913027‑M1/68‑1 (MQ=255) | AAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAA > CP009273/4532432‑4532566 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |