| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4532499 = | 33 (0.470) | 65 (1.070) | 33/116 | 0.1 | 74.9% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 15 (0.250) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
AAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA > CP009273/4532747‑4532879 | ttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaAt < 1:1318510‑M2/2‑1 (MQ=255)aaGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAt > 1:664572/1‑68 (MQ=255) gCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt > 1:741083/1‑68 (MQ=255) aatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGttt < 1:3746284‑M2/6‑1 (MQ=255) aatatatttatgcatgagaaaaaatccgtaacttatttatcataaggccagtttggccccaaATGttt < 1:1128000‑M2/6‑1 (MQ=255) atttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCAt > 1:6198460‑M2/60‑68 (MQ=255) tgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTgg > 1:1091247‑M2/53‑68 (MQ=255) gcttgagaaaaaatacgtaacttatttatgatatggacagtttgtccccaaATGTTTCATCTTTTggg > 1:2675712‑M2/52‑68 (MQ=255) gcttgagaaaaaatacgtaacttatttatgatatggacagtttggcggcaaTTGTTTCTTCTTTTggg > 1:2414555‑M2/52‑68 (MQ=255) gcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTggg < 1:2226287‑M2/17‑1 (MQ=255) gcttgagaaaaaatacgtaacttatatatgatatggacagtttggccccaaATGTTTCATCTTTTggg < 1:2498676‑M2/17‑1 (MQ=255) ctcaaaaaCTTTGACCGCGAAGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCATTTggg < 1:130140/65‑1 (MQ=255) cttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTgggg > 1:4271708‑M2/51‑68 (MQ=255) agaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaaa < 1:221407‑M2/22‑1 (MQ=255) agaaaaaatacggaacttatttaagatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaaa < 1:214126‑M2/22‑1 (MQ=255) aaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAAc < 1:6016424‑M2/24‑1 (MQ=255) aaaaaatacgcaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAAc < 1:1197263‑M2/24‑1 (MQ=255) aaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtg < 1:418626‑M2/26‑1 (MQ=255) ttGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgt < 1:3625879/68‑1 (MQ=255) ttGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgt < 1:3712366/68‑1 (MQ=255) aaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgt < 1:5953274‑M2/27‑1 (MQ=255) aaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgt < 1:237588‑M2/27‑1 (MQ=255) aatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgtg > 1:5912111‑M2/41‑68 (MQ=255) aatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgtg > 1:2788127‑M2/41‑68 (MQ=255) tacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAATCTGTGCa > 1:6087817‑M2/39‑68 (MQ=255) tCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCa > 1:1960349/1‑68 (MQ=255) ccGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGATTCATCTTTTGGGGGAAAACTGTGCAg < 1:845934/68‑1 (MQ=255) acgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAg < 1:710792‑M2/31‑1 (MQ=255) acgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAg < 1:3255609‑M2/31‑1 (MQ=255) acgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAg < 1:3261417‑M2/31‑1 (MQ=255) acgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAg < 1:1379357‑M2/31‑1 (MQ=255) acgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAg < 1:2212058‑M2/31‑1 (MQ=255) cgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAgt < 1:906185‑M2/32‑1 (MQ=255) cgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAgt < 1:1299393‑M2/32‑1 (MQ=255) cgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAgt < 1:889900‑M2/32‑1 (MQ=255) cgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAgt < 1:5637612‑M2/32‑1 (MQ=255) cgcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAgt < 1:2732919/68‑1 (MQ=255) agtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAgt < 1:2311407‑M2/32‑1 (MQ=255) gcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAgtg < 1:5869119/68‑1 (MQ=255) taacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAgtgt < 1:1953401‑M2/34‑1 (MQ=255) acttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg > 1:6146154‑M2/33‑68 (MQ=255) tatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCa < 1:4135533‑M2/39‑1 (MQ=255) atttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGTAAACTGTGCAGTGTTGGCAg < 1:592276‑M2/40‑1 (MQ=255) atttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAg < 1:3741663‑M2/40‑1 (MQ=255) tttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt < 1:2728934‑M2/41‑1 (MQ=255) tttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt > 1:3817678‑M2/28‑68 (MQ=255) tttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt < 1:2371190‑M2/41‑1 (MQ=255) tttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt > 1:1013498‑M2/28‑68 (MQ=255) ttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTc > 1:5885205‑M2/27‑68 (MQ=255) ccTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa > 1:1790752/1‑68 (MQ=255) atgatatggaccgtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaa < 1:3040533‑M2/44‑1 (MQ=255) tctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa > 1:4697918/1‑68 (MQ=255) gatatggccagtttggccccaaATGTTTCATCTTTTGGGGGAAATCTGTGCTGTGTTGGCAGTCAAAc > 1:1383154‑M2/23‑68 (MQ=255) gatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAc > 1:5325037‑M2/23‑68 (MQ=255) gatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAc > 1:1056181‑M2/23‑68 (MQ=255) atatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAATCt > 1:5610239‑M2/22‑68 (MQ=255) atatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt > 1:1999988‑M2/22‑68 (MQ=255) atatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt < 1:3351186‑M2/47‑1 (MQ=255) atatggacaggttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt > 1:952176‑M2/22‑68 (MQ=255) tatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTc > 1:5931860‑M2/21‑68 (MQ=255) tatggacagtttggcccaaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTc > 1:4764502‑M2/21‑68 (MQ=255) aTGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTc > 1:5493090/1‑68 (MQ=255) aTGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTc > 1:5232333/1‑68 (MQ=255) tGAGTCAAAATGGCCCCAAATGAATCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg < 1:204329/68‑1 (MQ=255) ggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt > 1:1003381‑M2/18‑68 (MQ=255) ggacagtttggccccaaATGTTTCATATTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAATCGtt > 1:2946707‑M2/18‑68 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGATATCTGTGCAGTGTTGGCTGTCTAACTCGTTTa > 1:3455357‑M2/16‑68 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa > 1:3713112‑M2/16‑68 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa > 1:256390‑M2/16‑68 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa > 1:5114544‑M2/16‑68 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa > 1:3658402‑M2/16‑68 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa > 1:3986403‑M2/16‑68 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTAGTTTa > 1:4398802‑M2/16‑68 (MQ=255) cagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTac > 1:2897819‑M2/15‑68 (MQ=255) cagcttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTac < 1:5230174‑M2/54‑1 (MQ=255) tttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaa < 1:379252‑M2/57‑1 (MQ=255) tttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaa < 1:1346528‑M2/57‑1 (MQ=255) tttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaa < 1:3572432‑M2/57‑1 (MQ=255) ttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa < 1:5085555‑M2/58‑1 (MQ=255) aTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa > 1:4803105/1‑68 (MQ=255) tggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaac > 1:441646‑M2/10‑68 (MQ=255) gccctaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaa < 1:4608855‑M2/61‑1 (MQ=255) gccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaa < 1:4712621‑M2/61‑1 (MQ=255) gccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaa < 1:1993500‑M2/61‑1 (MQ=255) gccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaa < 1:6124841‑M2/61‑1 (MQ=255) gccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaa < 1:4916649‑M2/61‑1 (MQ=255) cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg > 1:3650326‑M2/6‑68 (MQ=255) cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg < 1:3309903‑M2/63‑1 (MQ=255) cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg < 1:4794594‑M2/63‑1 (MQ=255) ccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgt < 1:2112468‑M2/64‑1 (MQ=255) ccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgt < 1:1436577‑M2/64‑1 (MQ=255) caaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTTGCAGTCAAACTCGTTTACAAAACAAAgtg < 1:2135290‑M2/65‑1 (MQ=255) aaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtgt < 1:2582308‑M2/66‑1 (MQ=255) aaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtgt < 1:2836823‑M2/66‑1 (MQ=255) aaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtgt < 1:2498568‑M2/66‑1 (MQ=255) aaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtgt < 1:3349252‑M2/66‑1 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa < 1:2549751‑M2/67‑1 (MQ=255) | AAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA > CP009273/4532747‑4532879 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |