| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4532507 | 33 (0.470) | 72 (1.190) | 32/116 | 0.2 | 76.8% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 15 (0.250) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
Only 100 of 211 total aligned reads displayed.
AGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAA > CP009273/4532441‑4532574 | ttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaa < 1:5085555‑M1/10‑1 (MQ=255)agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAATTAAATACAAGACAATTGGGGCCAt < 1:4506288‑M1/68‑2 (MQ=255)agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:478986/68‑1 (MQ=255)agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAt > 1:2801564‑M1/1‑67 (MQ=255)agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAt < 1:5581016‑M1/68‑2 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt > 1:3871541‑M1/1‑64 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttga > 1:1450024‑M1/1‑62 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:4278573/68‑1 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt > 1:3185863/1‑68 (MQ=255) taaactagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGt > 1:4398802‑M1/54‑68 (MQ=255) taaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGt > 1:3986403‑M1/54‑68 (MQ=255) taaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGt > 1:256390‑M1/54‑68 (MQ=255) taaacgagttagacagccaacactgcacagatatcccccaaaagatgaaacatTTGGGGCCAAACTGt > 1:3455357‑M1/54‑68 (MQ=255) aacgattttgactgccaacactgcacagttttcccccaaaatatgaaacatTTGGGGCCAAACTGTcc > 1:2946707‑M1/52‑68 (MQ=255) aacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTcc > 1:1003381‑M1/52‑68 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat > 1:5748929‑M1/1‑57 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat < 1:4915302‑M1/68‑12 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat < 1:615555‑M1/68‑12 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat > 1:634303‑M1/1‑57 (MQ=255) gagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCata > 1:5931860‑M1/49‑68 (MQ=255) attaACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat < 1:6101646‑M1/67‑12 (MQ=255) gtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATc > 1:1056181‑M1/47‑68 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcataga < 1:3727535‑M1/68‑15 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcataga < 1:5356162‑M1/68‑15 (MQ=255) acatATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCat < 1:275276/65‑1 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata > 1:4019255/1‑68 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata < 1:1954883/68‑1 (MQ=255) ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagagga > 1:5293010‑M1/1‑51 (MQ=255) ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagagga > 1:2628175‑M1/1‑51 (MQ=255) actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaa < 1:2371190‑M1/27‑1 (MQ=255) actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaa < 1:2728934‑M1/27‑1 (MQ=255) ctgccaacactgcacagtttacccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaat < 1:592276‑M1/28‑1 (MQ=255) tgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaata < 1:4135533‑M1/29‑1 (MQ=255) tGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagc > 1:4442123‑M1/1‑47 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgc > 1:3803086‑M1/1‑42 (MQ=255) actgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACg < 1:906185‑M1/36‑1 (MQ=255) actgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACg < 1:1299393‑M1/36‑1 (MQ=255) ctgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt < 1:1379357‑M1/37‑1 (MQ=255) ctgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt < 1:3255609‑M1/37‑1 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgg < 1:110928‑M1/68‑29 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgg < 1:2399778‑M1/68‑29 (MQ=255) aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggac > 1:2206571‑M1/1‑38 (MQ=255) gTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt > 1:5725638/1‑68 (MQ=255) cacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt > 1:5912111‑M1/29‑68 (MQ=255) cacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt > 1:2788127‑M1/29‑68 (MQ=255) acagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt < 1:5953274‑M1/41‑1 (MQ=255) tAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaa < 1:4256261‑M1/68‑34 (MQ=255) tAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaa < 1:2309329‑M1/68‑34 (MQ=255) tAAAAAAACAAATAAATACAAGACAATTGGGCCCAttttgactcatagcggaaagcatcgcggacaaa < 1:6045199‑M1/68‑34 (MQ=255) cagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt < 1:418626‑M1/42‑1 (MQ=255) gttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTGCGTAtttttt < 1:1197263‑M1/44‑1 (MQ=255) aaaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaact < 1:3932021‑M1/68‑36 (MQ=255) tttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct < 1:221407‑M1/46‑1 (MQ=255) aaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttt < 1:1748918‑M1/68‑39 (MQ=255) aaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttt > 1:4637716‑M1/1‑30 (MQ=255) ccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg > 1:4271708‑M1/19‑68 (MQ=255) cccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc < 1:2226287‑M1/51‑1 (MQ=255) cccaaaagatgaaacatTTGGGGACAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc > 1:2675712‑M1/18‑68 (MQ=255) aaataaatACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc < 1:1877512/68‑1 (MQ=255) aaataaatACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc < 1:2076238/68‑1 (MQ=255) aataaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagt < 1:785412‑M1/68‑44 (MQ=255) aataaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagt < 1:5838551‑M1/68‑44 (MQ=255) aataaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagt < 1:4755056‑M1/68‑44 (MQ=255) aataaataCAAGACAATTGGGGCCAttttgactcatagaggaaaccatcgcggacaaactttttcagc < 1:521969‑M1/68‑44 (MQ=255) taaaaaCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTATATCTCAAGCATa < 1:2465199/68‑1 (MQ=255) ataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatt > 1:3698387‑M1/1‑20 (MQ=255) aCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttctgtttatttg > 1:5167646‑M1/1‑18 (MQ=255) aCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttg > 1:1326773‑M1/1‑18 (MQ=255) aCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttg > 1:6183450‑M1/1‑18 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaac > 1:3088567/1‑67 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAat > 1:807593/1‑68 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAat > 1:2220038/1‑68 (MQ=255) aaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATAtt < 1:3746284‑M1/62‑1 (MQ=255) aaacatTTGGGGCCAAACTGGCCTTATGATAAATAAGTTACGGATTTTTTCTCATGCATAAATATAtt < 1:1128000‑M1/62‑1 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaacctttttcagtttatttgttggc < 1:2979781‑M1/68‑56 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggg > 1:5371645‑M1/1‑13 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc > 1:1537422‑M1/1‑13 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc < 1:3335057‑M1/68‑56 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaa > 1:3740946/1‑68 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaa > 1:4371188/1‑68 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 1:5321608‑M1/68‑61 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat > 1:179036‑M1/1‑8 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat > 1:1562927‑M1/1‑8 (MQ=255) TGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAATTTTTCTCAAGCATAAAAATATTAAAAAAc < 1:3043625‑M1/68‑1 (MQ=255) GGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACg > 1:1510496‑M1/1‑68 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:5783420‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:1329953‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:1736116‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:2453348‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:4975961‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:5703121‑M1/68‑63 (MQ=255) gggCCAttttgactcaaagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:5109558‑M1/68‑63 (MQ=255) GGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa > 1:2172087‑M1/1‑68 (MQ=255) ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatatt > 1:1661377‑M1/1‑5 (MQ=255) GGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAc > 1:5336750‑M1/1‑68 (MQ=255) GGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAc < 1:5993958‑M1/68‑1 (MQ=255) GGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAc < 1:3478108‑M1/68‑1 (MQ=255) gCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattc > 1:5505453‑M1/1‑4 (MQ=255) attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctat < 1:3599713‑M1/68‑68 (MQ=255) attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctat < 1:3914781‑M1/68‑68 (MQ=255) | AGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAA > CP009273/4532441‑4532574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |