New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1104827 =	5 (0.090)	55 (0.970)	32/134	0.2	91.7%	coding (37/1536 nt)	opgG	osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein
	?	CP009273	= 1391495	NA (NA)					intergenic (+146/‑127)	insH1/ynaJ	IS5 transposase and trans‑activator/DUF2534 family putative inner membrane protein

GATTGAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1104891‑1104827 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAG  <  CP009273/1391495‑1391429                                                                                                                                      GATTGAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGA                                                                  >  1:1709425/1‑68  ATTGAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTATGGAA                                                                 >  1:5551484/1‑68       GCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGC                                                            >  1:5489917/1‑68       GCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGC                                                            <  1:3964162/68‑1          TGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAA                                                         <  1:4879868/68‑1             TTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAA                                                      >  1:348016/1‑68             TTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAA                                                      >  1:5211955/1‑68                  GACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGG                                                 <  1:853334/68‑1                  GACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGG                                                 <  1:3796739/68‑1                      TCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAA                                             <  1:546640/68‑1                          CAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCT                                         <  1:2715920/68‑1                          CAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCT                                         >  1:4231465/1‑68                            ATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTC                                       >  1:5483051/1‑68                            ATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTC                                       >  1:93531/1‑68                             TACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCT                                      >  1:546958/1‑68                              ACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC                                     >  1:2602797/1‑68                              ACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC                                     >  1:5469852/1‑68                               CTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCG                                    <  1:1267422/68‑1                               CTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCG                                    <  1:4720233/68‑1                                   AAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG                                >  1:3739387/1‑68                                   AAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG                                >  1:3333738/1‑68                                    AGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGc                               >  1:526831/1‑67                                     GCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAC                              >  1:5512455/1‑68                                     GCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAC                              >  1:1915341/1‑68                                     GCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAC                              >  1:4439681/1‑68                                        CAGCTTGAAGATGTATACAGCGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCA                           <  1:2076986/68‑1                                            TTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTAAGTCA                       >  1:5252932/1‑68                                             TGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCAT                      <  1:4927978/68‑1                                              GAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATT                     <  1:3973820/68‑1                                              GAAGAGGTATACAGCGTTAAGGAAGGTCCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCTTT                     <  1:4404455/68‑1                                                AGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTC                   >  1:1435221/1‑68                                                 GATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA                  <  1:3614694/68‑1                                                 GATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA                  >  1:4051417/1‑68                                                 GATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA                  >  1:48042/1‑68                                                     TATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTC              >  1:3432242/1‑68                                                     TATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTC              <  1:3543182/68‑1                                                      ATACTGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCT             <  1:1429205/68‑1                                                        ACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC           >  1:4009698/1‑68                                                        ACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC           >  1:5399124/1‑68                                                        ACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC           >  1:1888127/1‑68                                                         CAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCA          >  1:3600095/1‑68                                                          AGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCAT         >  1:2788789/1‑68                                                           ctGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATG        <  1:3450992/66‑1                                                           GGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTTAGTCATTTCATTTCTTCATG        >  1:3951331/1‑68                                                           GGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATG        >  1:4772468/1‑68                                                           GGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATG        >  1:771755/1‑68                                                           GGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATG        >  1:3317425/1‑68                                                           GGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATG        >  1:2058019/1‑68                                                             GTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCTTTTCATTTCTTCATGTT      >  1:2801565/1‑68                                                             GTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTT      >  1:2004154/1‑68                                                             GTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTT      >  1:728483/1‑68                                                               TAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTG    >  1:2717768/1‑68                                                                AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGA   >  1:141520/1‑68                                                                 AGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAG  >  1:357741/1‑68                                                                 AGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAG  <  1:1259273/68‑1                                                                                                                                      GATTGAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1104891‑1104827 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAG  <  CP009273/1391495‑1391429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.