| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | CP009273 | 2,400,028 | Δ9 bp | coding (85‑93/939 nt) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 2400028 | 2400036 | 9 | 68 [0] | [0] 69 | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2400027 | 0 (0.000) | 63 (1.260) | 32/118 | 0.1 | 100% | coding (94/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
| ? | CP009273 | 2400037 = | 0 (0.000) | coding (84/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes | |||||
TCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2399954‑2400027‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTAT > CP009273/2400037‑2400099 taTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGC > 1:54549/3‑68 CTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCG < 1:1668540/68‑1 TTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGC > 1:2832278/1‑68 TCCCACCGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCA < 1:132562/68‑1 TCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCA < 1:37935/68‑1 TCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCA < 1:308409/68‑1 CCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAG > 1:1192993/1‑68 CCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAG > 1:5452174/1‑68 CAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCA > 1:4700722/1‑68 ACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAA < 1:4272111/68‑1 CGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAA > 1:482482/1‑68 tGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGT < 1:3668522/67‑1 AGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGT < 1:5258137/68‑1 AGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGT < 1:1701994/68‑1 CCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGA > 1:1424183/1‑68 CCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGA < 1:1400107/68‑1 CAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGAT > 1:4822454/1‑68 CAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGAT < 1:421356/68‑1 CAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGAT < 1:4429084/68‑1 GACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCG < 1:2010486/68‑1 cCGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG > 1:1699562/2‑68 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG > 1:3177397/1‑68 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG > 1:1106851/1‑68 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG > 1:4698687/1‑68 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG > 1:4112767/1‑68 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG > 1:5163354/1‑68 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG > 1:2296996/1‑68 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG > 1:4288905/1‑68 ACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGG < 1:801719/68‑1 GCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACA < 1:1498939/68‑1 ATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGC > 1:2765416/1‑68 TTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCA > 1:305751/1‑68 TGCTGACTTACGGCGGACTGAGTACGCCACCCAGCGGCTGCAAAAGTGTTCAGATCGGCCCCAGCAcc > 1:4971408/1‑66 GCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACA < 1:4600440/68‑1 GCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACA < 1:4711952/68‑1 GCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACA < 1:4780131/68‑1 GACTTACGGCGGACTGAGTACGCCACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAAT > 1:3141659/1‑68 ACTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATG > 1:92927/1‑68 CTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGT > 1:550143/1‑68 CTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGT > 1:1531041/1‑68 CTTACGGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGT < 1:1833037/68‑1 GGCGGACTGAGTACGACACACAGCGGGAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGATCTCA > 1:4895921/1‑68 GGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCA < 1:5030300/68‑1 GGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCA > 1:4680571/1‑68 GGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCA < 1:5166650/68‑1 GGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCA > 1:724174/1‑68 GGCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCA > 1:1200138/1‑68 GCGGACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACTGCAACAAATGTTCTCAG > 1:4328085/1‑68 GCGGACTGAGTACGACACACAGCGGCAGCAAAAGAGTTCAGATCGGCAACAGCAACAAATGTTCTCAG > 1:954831/1‑68 ACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGA < 1:1037095/68‑1 ACTGAGTACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGA < 1:4124512/68‑1 TACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGCGG > 1:3542841/1‑68 TACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGG > 1:1519987/1‑68 ACGACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGT > 1:3030071/1‑68 ACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCGACAAATGTTCTCAGCAGATCGAGGTCGA > 1:1521582/1‑68 ACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGA > 1:3791932/1‑68 ACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGA > 1:5575894/1‑68 ACACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGA > 1:1946662/1‑68 CACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAG < 1:2734409/68‑1 CACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAG < 1:1220978/68‑1 CACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAG < 1:906104/68‑1 CACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAG < 1:1326068/68‑1 CACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAG < 1:68384/68‑1 CACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAG < 1:4536256/68‑1 CACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTAGAG < 1:1838919/68‑1 CACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGACGAG < 1:4045103/68‑1 ACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGG < 1:3547069/68‑1 ACACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCACAGCAGATCGAGGTCGAGG > 1:3291542/1‑68 CACAGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGT < 1:3024762/68‑1 ACAGCGGCAGCAAAAGTGTTCAGCTCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTT > 1:1578234/1‑68 AGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCCAGGTTAA > 1:3741309/1‑68 GCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAT > 1:3173057/1‑68 GCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAT < 1:4017672/68‑1 CGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATT < 1:2099234/68‑1 GGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTA > 1:4908780/1‑68 GCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTAT > 1:2639316/1‑68 TCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2399954‑2400027‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTAT > CP009273/2400037‑2400099 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |