Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | CP009273 | 2,400,028 | Δ9 bp | coding (85‑93/939 nt) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | CP009273 | 2400028 | 2400036 | 9 | 68 [0] | [0] 69 | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | = 2400027 | 0 (0.000) | 63 (1.260) | 32/118 | 0.1 | 100% | coding (94/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
? | CP009273 | 2400037 = | 0 (0.000) | coding (84/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
CAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAG > CP009273/2399961‑2400090 | cAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCa > 1:4700722‑M1/1‑67 (MQ=255) aCGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaa < 1:4272111‑M1/68‑4 (MQ=255) cGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaa > 1:482482‑M1/1‑64 (MQ=255) tgttgttcCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagt < 1:3668522‑M1/67‑7 (MQ=255) aGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagt < 1:5258137‑M1/68‑7 (MQ=255) aGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagt < 1:1701994‑M1/68‑7 (MQ=255) ccAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcaga < 1:1400107‑M1/68‑14 (MQ=255) ccAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcaga > 1:1424183‑M1/1‑55 (MQ=255) cAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagat < 1:421356‑M1/68‑15 (MQ=255) cAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagat < 1:4429084‑M1/68‑15 (MQ=255) cAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagat > 1:4822454‑M1/1‑54 (MQ=255) gACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcg < 1:2010486‑M1/68‑17 (MQ=255) ccgCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcgg > 1:1699562‑M1/2‑51 (MQ=255) aCGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcgg > 1:2296996‑M1/1‑51 (MQ=255) aCGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcgg > 1:1106851‑M1/1‑51 (MQ=255) aCGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcgg > 1:3177397‑M1/1‑51 (MQ=255) aCGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcgg > 1:4698687‑M1/1‑51 (MQ=255) aCGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcgg > 1:4112767‑M1/1‑51 (MQ=255) aCGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcgg > 1:4288905‑M1/1‑51 (MQ=255) aCGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcgg > 1:5163354‑M1/1‑51 (MQ=255) aCGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcgg < 1:801719‑M1/68‑18 (MQ=255) gCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaaca < 1:1498939‑M1/68‑23 (MQ=255) aTTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagc > 1:2765416‑M1/1‑44 (MQ=255) tttGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagca > 1:305751‑M1/1‑43 (MQ=255) tGCTGACTTACGGCGGACTGAGTACGCCACCCAGCGGCTGCaaaagtgttcagatcggccccagcacc > 1:4971408‑M1/1‑41 (MQ=255) gCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaaca < 1:4780131‑M1/68‑29 (MQ=255) gCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaaca < 1:4711952‑M1/68‑29 (MQ=255) gCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaaca < 1:4600440‑M1/68‑29 (MQ=255) gACTTACGGCGGACTGAGTACGCCACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaat > 1:3141659‑M1/1‑37 (MQ=255) aCTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatg > 1:92927‑M1/1‑36 (MQ=255) cTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgt > 1:1531041‑M1/1‑35 (MQ=255) cTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgt > 1:550143‑M1/1‑35 (MQ=255) cTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgt < 1:1833037‑M1/68‑34 (MQ=255) ggcggACTGAGTACGACACACAGCGGGAGCaaaagtgttcagatcggcaacagcaacaaatgatctca > 1:4895921‑M1/1‑30 (MQ=255) ggcggACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctca > 1:724174‑M1/1‑30 (MQ=255) ggcggACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctca > 1:4680571‑M1/1‑30 (MQ=255) ggcggACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctca < 1:5030300‑M1/68‑39 (MQ=255) ggcggACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctca < 1:5166650‑M1/68‑39 (MQ=255) ggcggACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctca > 1:1200138‑M1/1‑30 (MQ=255) gcggACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaactgcaacaaatgttctcag > 1:4328085‑M1/1‑29 (MQ=255) gcggACTGAGTACGACACACAGCGGCAGCaaaagagttcagatcggcaacagcaacaaatgttctcag > 1:954831‑M1/1‑29 (MQ=255) aCTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcaga < 1:4124512‑M1/68‑44 (MQ=255) aCTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcaga < 1:1037095‑M1/68‑44 (MQ=255) tACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgcgg > 1:3542841‑M1/1‑19 (MQ=255) tACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgagg > 1:1519987‑M1/1‑19 (MQ=255) aCGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggt > 1:3030071‑M1/1‑18 (MQ=255) acacacAGCGGCAGCaaaagtgttcagatcggcaacagcgacaaatgttctcagcagatcgaggtcga > 1:1521582‑M1/1‑15 (MQ=255) acacacAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcga > 1:1946662‑M1/1‑15 (MQ=255) acacacAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcga > 1:5575894‑M1/1‑15 (MQ=255) acacacAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcga > 1:3791932‑M1/1‑15 (MQ=255) cacacaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgag < 1:1326068‑M1/68‑55 (MQ=255) cacacaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgag < 1:906104‑M1/68‑55 (MQ=255) cacacaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgag < 1:1220978‑M1/68‑55 (MQ=255) cacacaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgag < 1:68384‑M1/68‑55 (MQ=255) cacacaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgag < 1:2734409‑M1/68‑55 (MQ=255) cacacaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgag < 1:4536256‑M1/68‑55 (MQ=255) cacacaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtagag < 1:1838919‑M1/68‑55 (MQ=255) cacacaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggacgag < 1:4045103‑M1/68‑55 (MQ=255) acacaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgagg < 1:3547069‑M1/68‑56 (MQ=255) acacaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttcacagcagatcgaggtcgagg > 1:3291542‑M1/1‑13 (MQ=255) cacaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggt < 1:3024762‑M1/68‑57 (MQ=255) acaGCGGCAGCaaaagtgttcagctcggcaacagcaacaaatgttctcagcagatcgaggtcgaggtt > 1:1578234‑M1/1‑11 (MQ=255) aGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtccaggttaa > 1:3741309‑M1/1‑9 (MQ=255) gCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaat > 1:3173057‑M1/1‑8 (MQ=255) gCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaat < 1:4017672‑M1/68‑61 (MQ=255) cGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaatt < 1:2099234‑M1/68‑62 (MQ=255) ggCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaatta > 1:4908780‑M1/1‑6 (MQ=255) gcagcaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattat > 1:2639316‑M1/1‑5 (MQ=255) | CAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAG > CP009273/2399961‑2400090 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |