| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3577555 | NA (NA) | 107 (1.890) | 39/134 | 0.1 | 100% | intergenic (+15/‑1) | insB1/yrhA | IS1 transposase B/pseudogene, interrupted by IS1E |
| ? | CP009273 | 4232204 = | 0 (0.000) | intergenic (‑22/+350) | xylE/malG | D‑xylose transporter/maltose transporter subunit | |||||
Only 100 of 107 total aligned reads displayed.
TGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3577491‑3577555‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAA > CP009273/4232204‑4232270 TGCATGACAAAGTCATCGCGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTG > 1:264252/1‑68 GCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGA < 1:1101191/68‑1 GCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGA < 1:773123/68‑1 ATGACAAAGTCATCGGGCATTATCTTAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC < 1:4998889/68‑1 ATGACAAAGTCATCGGGCATTATCTGCACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC < 1:3177404/68‑1 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTTGAGTCATTACCCTGATC < 1:5399708/68‑1 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC < 1:5189889/68‑1 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC < 1:2152610/68‑1 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC < 1:584933/68‑1 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC < 1:3090178/68‑1 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC < 1:4810623/68‑1 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC < 1:1308443/68‑1 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC < 1:888293/68‑1 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC < 1:775875/68‑1 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC < 1:3486923/68‑1 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC < 1:1679215/68‑1 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC < 1:1621624/68‑1 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC < 1:3387927/68‑1 ATGACAAAGTCATCGGGCAATATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC < 1:3010798/68‑1 GACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTT < 1:4874166/68‑1 GACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTT < 1:39205/68‑1 AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTA > 1:5308784/1‑68 AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTA > 1:805893/1‑68 AAAGTCATCGGGCAATATCTGAACATAAAACACTATCAATAAGTTGCAGTCATTACCCTGATCTTTTA < 1:2439382/68‑1 AGTCATCGGGCATTATCTGAACATAACACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATC < 1:5388302/68‑1 GTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCA > 1:2208618/1‑68 GTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCA > 1:4043597/1‑68 GTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCA > 1:2950532/1‑68 GTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTCATCTTTTATCA > 1:2681767/1‑68 TCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAG < 1:3031845/68‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGT < 1:2134718/68‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGT < 1:535658/68‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGT < 1:831811/68‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAACTTGCAGTCATTACCCTGATCTTTTATCAGT < 1:5483255/68‑1 GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATT > 1:4454209/1‑68 CATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGA < 1:1811113/68‑1 CATAATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGA < 1:4702616/68‑1 ATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGAT < 1:4864052/68‑1 ATTATCTGAACATAAAACACTAGCAATAAGGTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGAT < 1:834023/68‑1 TTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATG < 1:5207882/68‑1 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTG > 1:510428/1‑68 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTG > 1:5410486/1‑68 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTG > 1:3159156/1‑68 ACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATT < 1:329168/68‑1 ACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATT < 1:4516134/68‑1 ACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATT > 1:2914775/1‑68 ACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGC > 1:571744/1‑68 ACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGC > 1:4292180/1‑68 ACACTATCAATAAGTTGGAGTCATTACCATGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGC > 1:527478/1‑68 CACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCA > 1:1608945/1‑68 CACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCA > 1:4895774/1‑68 CACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCA > 1:2101964/1‑68 CACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCA > 1:4649581/1‑68 CACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCA > 1:2723821/1‑68 CACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCA > 1:5637025/1‑68 CACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCA > 1:4054134/1‑68 ACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAG < 1:5217388/68‑1 ACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAG < 1:2006645/68‑1 ACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAG < 1:463701/68‑1 ATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTA > 1:3287029/1‑68 ATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTA > 1:4805072/1‑68 TCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAA > 1:559145/1‑68 CAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAG > 1:3509770/1‑68 AATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGG > 1:5251115/1‑68 TAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGaa > 1:197711/1‑66 TAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCA > 1:4529568/1‑68 TAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCA > 1:389858/1‑68 TAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCA > 1:3009583/1‑68 TAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCA > 1:740258/1‑68 TAAGTTGGAGTCATTACCCTGATCATTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGGTAAGGCA > 1:3926051/1‑68 AAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAA < 1:3476799/68‑1 AGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAT > 1:1103014/1‑68 AGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAT > 1:5636128/1‑68 AGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAT > 1:456855/1‑68 AGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAT > 1:4175713/1‑68 AGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAT > 1:3875482/1‑68 AGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAT > 1:1464437/1‑68 AGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAT > 1:3732653/1‑68 AGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAT > 1:1877485/1‑68 AGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAT < 1:3291727/68‑1 AGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAT > 1:3215236/1‑68 GTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATT < 1:1220954/68‑1 TTGGAGTCATTACCCTGATCTTTTTTCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTA > 1:3399689/1‑68 TTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTA > 1:5165737/1‑68 TTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTA > 1:2149944/1‑68 TTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTA > 1:2929467/1‑68 GGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATC < 1:978834/68‑1 aggCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAT < 1:2800057/65‑1 AGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCACTTATCAT > 1:5071423/1‑68 AGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAT < 1:2047595/68‑1 AGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAT > 1:1597026/1‑68 AGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAT > 1:3766818/1‑68 GTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATT > 1:4223517/1‑68 TCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTT > 1:57567/1‑68 TACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTA > 1:2082919/1‑68 CCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACA > 1:2316039/1‑68 CCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACA > 1:3440103/1‑68 CCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACA > 1:123501/1‑68 CCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAA > 1:3125701/1‑68 CCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAA > 1:3225140/1‑68 TGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3577491‑3577555‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAA > CP009273/4232204‑4232270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |