New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | = 3577555 | NA (NA) | 107 (1.890) | 39/134 | 0.1 | 100% | intergenic (+15/‑1) | insB1/yrhA | IS1 transposase B/pseudogene, interrupted by IS1E |
? | CP009273 | 4232204 = | 0 (0.000) | intergenic (‑22/+350) | xylE/malG | D‑xylose transporter/maltose transporter subunit |
Only 100 of 109 total aligned reads displayed.
AAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAAT > CP009273/4232139‑4232271 | tgcatgacaaagtcatcgcgcattatctgaacataaaacactatcaataagttggagtcattaccCTg > 1:264252‑M2/66‑68 (MQ=255) gcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGa < 1:1101191‑M2/4‑1 (MQ=255) gcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGa < 1:773123‑M2/4‑1 (MQ=255) atgacaaagtcatcgggcattatcttaacataaaacactatcaataagttggagtcattaccCTGATc < 1:4998889‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgcacataaaacactatcaataagttggagtcattaccCTGATc < 1:3177404‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagtttgagtcattaccCTGATc < 1:5399708‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATc < 1:1621624‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATc < 1:1679215‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATc < 1:775875‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATc < 1:2152610‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATc < 1:888293‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATc < 1:1308443‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATc < 1:3486923‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATc < 1:3387927‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATc < 1:584933‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATc < 1:5189889‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagatggagtcattaccCTGATc < 1:4289090‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcaatatctgaacataaaacactatcaataagttggagtcattaccCTGATc < 1:3010798‑M2/6‑1 (MQ=255) gacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCtt < 1:4874166‑M2/8‑1 (MQ=255) gacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCtt < 1:39205‑M2/8‑1 (MQ=255) aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTa > 1:5308784‑M2/58‑68 (MQ=255) aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTa > 1:805893‑M2/58‑68 (MQ=255) agtcatcgggcattatctgaacataacacactatcaataagttggagtcattaccCTGATCTTTTATc < 1:5388302‑M2/13‑1 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCa > 1:2950532‑M2/55‑68 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCa > 1:4043597‑M2/55‑68 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCa > 1:2208618‑M2/55‑68 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTCATCTTTTATCa > 1:2681767‑M2/55‑68 (MQ=255) tcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAg < 1:3031845‑M2/15‑1 (MQ=255) catcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGt < 1:831811‑M2/16‑1 (MQ=255) catcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGt < 1:535658‑M2/16‑1 (MQ=255) catcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGt < 1:2134718‑M2/16‑1 (MQ=255) catcgggcattatctgaacataaaacactatcaataagttggagacattaccCTGATCTTTTATCAGt < 1:2061034‑M2/16‑1 (MQ=255) catcgggcattatctgaacataaaacactatcaataacttgcagtcattaccCTGATCTTTTATCAGt < 1:5483255‑M2/16‑1 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCAtt > 1:4454209‑M2/48‑68 (MQ=255) cattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGa < 1:1811113‑M2/23‑1 (MQ=255) cataatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGa < 1:4702616‑M2/23‑1 (MQ=255) attatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGAt < 1:4864052‑M2/24‑1 (MQ=255) attatctgaacataaaacactagcaataaggtggagtcattaccCTGATCTTTTATCAGTGCATTGAt < 1:834023‑M2/24‑1 (MQ=255) ttatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATg < 1:5207882‑M2/25‑1 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTg > 1:3159156‑M2/41‑68 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTg > 1:5410486‑M2/41‑68 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTg > 1:510428‑M2/41‑68 (MQ=255) acataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAAtt < 1:329168‑M2/33‑1 (MQ=255) acataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAAtt < 1:4516134‑M2/33‑1 (MQ=255) acataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAAtt > 1:2914775‑M2/36‑68 (MQ=255) acactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGc > 1:571744‑M2/29‑68 (MQ=255) acactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGc > 1:4292180‑M2/29‑68 (MQ=255) acactatcaataagttggagtcattaccATGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGc > 1:527478‑M2/29‑68 (MQ=255) cactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCa > 1:1608945‑M2/28‑68 (MQ=255) cactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCa > 1:4054134‑M2/28‑68 (MQ=255) cactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCa > 1:4895774‑M2/28‑68 (MQ=255) cactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCa > 1:2101964‑M2/28‑68 (MQ=255) cactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCa > 1:4649581‑M2/28‑68 (MQ=255) cactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCa > 1:2723821‑M2/28‑68 (MQ=255) cactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTAAGGCa > 1:5035852‑M2/28‑68 (MQ=255) actatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAg < 1:2006645‑M2/42‑1 (MQ=255) actatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAg < 1:463701‑M2/42‑1 (MQ=255) ctatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGt > 1:3391682‑M2/26‑68 (MQ=255) atcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTa > 1:3287029‑M2/24‑68 (MQ=255) atcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTa > 1:4805072‑M2/24‑68 (MQ=255) tcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTaa > 1:559145‑M2/23‑68 (MQ=255) caataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAg > 1:3509770‑M2/22‑68 (MQ=255) aataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAgg > 1:5251115‑M2/21‑68 (MQ=255) taagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTaaggaa > 1:197711‑M2/19‑66 (MQ=255) taagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCa > 1:389858‑M2/19‑68 (MQ=255) taagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCa > 1:740258‑M2/19‑68 (MQ=255) taagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCa > 1:3009583‑M2/19‑68 (MQ=255) taagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCa > 1:4529568‑M2/19‑68 (MQ=255) taagttggagtcattaccCTGATCATTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGGTAAGGCa > 1:3926051‑M2/19‑68 (MQ=255) aagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCaa < 1:3476799‑M2/51‑1 (MQ=255) agttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCTGGCAGTTAAGGCAAt > 1:2946247‑M2/17‑68 (MQ=255) agttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAt > 1:1103014‑M2/17‑68 (MQ=255) agttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAt > 1:5636128‑M2/17‑68 (MQ=255) agttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAt > 1:1464437‑M2/17‑68 (MQ=255) agttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAt > 1:456855‑M2/17‑68 (MQ=255) agttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAt > 1:3875482‑M2/17‑68 (MQ=255) agttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAt > 1:3732653‑M2/17‑68 (MQ=255) agttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAt < 1:3291727‑M2/52‑1 (MQ=255) agttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAt > 1:3215236‑M2/17‑68 (MQ=255) gttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAtt < 1:1220954‑M2/53‑1 (MQ=255) ttggagtcattaccCTGATCTTTTTTCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTa > 1:3399689‑M2/15‑68 (MQ=255) ttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTa > 1:5165737‑M2/15‑68 (MQ=255) ttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTa > 1:2149944‑M2/15‑68 (MQ=255) ttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTa > 1:2929467‑M2/15‑68 (MQ=255) ggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATc < 1:978834‑M2/56‑1 (MQ=255) agtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCACTTATCAt > 1:5071423‑M2/11‑68 (MQ=255) agtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAt > 1:3766818‑M2/11‑68 (MQ=255) agtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAt < 1:2047595‑M2/58‑1 (MQ=255) agtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAt > 1:1597026‑M2/11‑68 (MQ=255) aggcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAt < 1:2800057‑M2/58‑1 (MQ=255) gtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAtt > 1:4223517‑M2/10‑68 (MQ=255) tcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAttt > 1:57567‑M2/9‑68 (MQ=255) taccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTa > 1:2082919‑M2/5‑68 (MQ=255) ccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACa > 1:123501‑M2/3‑68 (MQ=255) ccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACa > 1:2316039‑M2/3‑68 (MQ=255) cCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACaa > 1:5585349‑M2/2‑68 (MQ=255) cCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACaa > 1:3125701‑M2/2‑68 (MQ=255) cCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACaa > 1:3225140‑M2/2‑68 (MQ=255) cTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAAt > 1:1791516/1‑68 (MQ=255) cTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAAt > 1:4902006/1‑68 (MQ=255) | AAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAAT > CP009273/4232139‑4232271 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |