| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4161725 | 20 (0.350) | 3 (0.000) | 3/122 | 4.0 | 18.6% | intergenic (+41/‑260) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | KX077536 | = 8154 | 8 (0.000) | intergenic (+79/–) | unknown/– | cat/– | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 758 total aligned reads displayed.
CCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4161655‑4161725‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttcgACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGGC < KX077536/8154‑8088 CTTTCGTCTGAGCCTTTCGTTTTATTTGATGTCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:1567634/1‑68 CTTTCGTCTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:2065398/68‑1 CTTTCGTCTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:5081195/68‑1 CTTTCGACTGAGCCTTTCGTTTTGTTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:1039736/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTTATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:4460244/68‑1 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCCCGCGTACCATGGGATCCCCCGGGCTGCc > 1:5366251/1‑67 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTCCCATGGGATCCCCCGGGCTGCA > 1:4758886/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGTTCCCCCGGGCTGCA > 1:600406/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGCTCCCCCGGGCTGCA > 1:5422043/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGCTCCCCCGGGCTGCA > 1:3815934/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCc > 1:2400199/1‑67 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:3775366/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:4138914/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:4007897/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:3046581/68‑1 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:3890942/68‑1 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:3865484/68‑1 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:947609/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:3248768/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:3180277/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:3678959/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:3613822/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:3549787/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:3512239/68‑1 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:3369376/68‑1 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:4178706/68‑1 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:4226337/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:427641/68‑1 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:4427245/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:4541728/68‑1 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:4996511/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:5224097/68‑1 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:5389487/68‑1 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:5466456/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:5498997/68‑1 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:5645698/68‑1 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:648988/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:68849/68‑1 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:759479/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:896192/68‑1 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:2724548/68‑1 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:1221797/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:1965223/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:2497517/68‑1 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:255000/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:1855391/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:1203744/68‑1 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA < 1:2307286/68‑1 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:2692368/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:1824913/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:12609/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:1780784/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:2850379/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:1719071/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:2252938/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:1329051/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATACCCCGGGCAGCA > 1:1365047/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACAATGGGATCCCCCGGGCTGCA > 1:4817469/1‑68 CTTTCGACTGAGCCTTTCGTTTTATTTGATGACTCTAGCACGCGTACCATGGGATCCCCCGGTCTGCA > 1:4689725/1‑68 CTTTCGACTGAGCCGTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:4952311/1‑68 CTTTCGACTGAGCCGTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:3007627/1‑68 CTTTCGAATGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCA > 1:5111565/1‑68 taTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAG < 1:1619335/66‑1 TTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCCCGCGTACCATGGGATCCCCCGGGCTGCAG > 1:856660/1‑68 TTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAG < 1:2222268/68‑1 TTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAG < 1:1446456/68‑1 TTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAG < 1:3446652/68‑1 TTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAG < 1:2183624/68‑1 TTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAG > 1:4572967/1‑68 TTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAG > 1:2346331/1‑68 TTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAG < 1:4331676/68‑1 TTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCCGGCTGCAG > 1:243118/1‑68 TTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCACCGGGCTGCAG > 1:462897/1‑68 TTTCGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATCGGATCCCCCGGGCTGCAG < 1:1116646/68‑1 CGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGG < 1:3718716/68‑1 CGACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGG < 1:5271978/68‑1 GACTGAGCCTTTCGTTTTATTTGTTGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGGC > 1:3298167/1‑68 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCCCGCGTACCATGGGATCCCCCGGGCTGCAGCGGC > 1:1665674/1‑68 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGCTCCCCCGGGCTGCAGCtcg > 1:4881705/1‑65 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGCTCCCCCGGGCTGCAGCGGC > 1:439897/1‑68 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCtgt > 1:3106117/1‑65 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGGC > 1:29115/1‑68 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGGC > 1:1497225/1‑68 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGGC > 1:78348/1‑68 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGGC > 1:1152205/1‑68 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGGC > 1:5320583/1‑68 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGGC > 1:5164579/1‑68 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGGC > 1:490461/1‑68 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGGC > 1:1930086/1‑68 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGGC > 1:2038579/1‑68 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGGC > 1:3944810/1‑68 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGGC > 1:2592033/1‑68 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGGC > 1:2660324/1‑68 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGGC > 1:2782839/1‑68 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGGC > 1:333233/1‑68 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGGC > 1:2879625/1‑68 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCACCCTGGCTGCAGCGGC > 1:4100595/1‑68 GACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGCACCATGGGATCCCCCGGGCTGCAGCGGC > 1:141697/1‑68 GACTGAGCCTTTCGTTTTATGTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGGC > 1:5570400/1‑68 GACTGAGCCTTTCGGTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGGC > 1:1009682/1‑68 CCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4161655‑4161725‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttcgACTGAGCCTTTCGTTTTATTTGATGCCTCTAGCACGCGTACCATGGGATCCCCCGGGCTGCAGCGGC < KX077536/8154‑8088 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |