| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4161725 | 20 (0.350) | 3 (0.000) | 3/122 | 4.0 | 18.6% | intergenic (+41/‑260) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | KX077536 | = 8154 | 8 (0.000) | intergenic (+79/–) | unknown/– | cat/– | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 217 total aligned reads displayed.
AGCGCGGCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTT‑‑‑ > KX077536/8082‑8187 | ggCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCTGt < 1:3623713/68‑1 (MQ=255) ggCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:557361/68‑1 (MQ=39) ggCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:4853719/68‑1 (MQ=39) ggCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:2058718/68‑1 (MQ=39) ggCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:4822098/68‑1 (MQ=39) ggCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:2214525/68‑1 (MQ=39) ggCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:4774376/68‑1 (MQ=39) ggCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:1452214/68‑1 (MQ=39) ggCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:2447985/68‑1 (MQ=39) ggCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:725876/68‑1 (MQ=39) ggCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:4175979/68‑1 (MQ=39) ggCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:385442/68‑1 (MQ=39) ggCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCAAGAGGCATCATATAAAACGAAAGGCTCAGt < 1:5125693/68‑1 (MQ=255) ggCCGCGGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:5379485/68‑1 (MQ=255) agCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGt < 1:4052037/67‑1 (MQ=37) gcggCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4249058/65‑1 (MQ=14) gCCGCTGCTGCGCGGGGGATCCCATGGTAGGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1163924/68‑1 (MQ=11) gCCGCTGCAGCCCGGGGTATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4460097/68‑1 (MQ=255) gCCGCTGCAGCCCGGGGGTTCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2554575/68‑1 (MQ=255) gCCGCTGCAGCCCGGGGGATCCCATGGTGCGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:148619/68‑1 (MQ=255) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTTGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:346552/68‑1 (MQ=255) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAATAAAAACGAATGGCTCAGTc < 1:2701581/68‑1 (MQ=11) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAACCGAAAGGCTCAGTc < 1:1009682/68‑1 (MQ=255) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4342201/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3707524/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3565616/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:946956/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:880828/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3918880/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3944810/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:840708/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:839524/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4205200/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:78348/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:517226/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4409360/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:600979/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5620073/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5559841/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4516644/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4539111/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4592631/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4690228/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5506883/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5396253/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5329321/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5253786/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1437018/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2295438/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:223054/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:333233/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1958660/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1868942/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1673872/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1650992/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1612666/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1541255/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1497225/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2038579/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1387572/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1357148/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1323152/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1278375/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1230007/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1202747/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1134368/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1082513/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:1029363/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2786390/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3278882/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:325196/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:317/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:3039174/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2960517/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2912914/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2898208/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2795459/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2344347/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2683840/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:26234/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2584410/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:2350891/68‑1 (MQ=37) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCGCAGTc < 1:4116499/68‑1 (MQ=255) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGGGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5077717/68‑1 (MQ=255) gCCGCTGCAGCCCGGGGGATCCCATGGTACGCGGGCTAGACGCATCAAATAAAACGAAAGGCTCAGTc < 1:5387852/68‑1 (MQ=255) gCCGCTGCAGCCAGGGTGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:4100595/68‑1 (MQ=255) cgagCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAATACGATAGGCTCAGTc < 1:2868791/65‑1 (MQ=1) ccagCTGCAGCCCGGGGGATCCCATGGTACGCTTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTc < 1:5366744/65‑1 (MQ=255) ccGCTGCCGCCCGGGGGCTCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGGCg > 1:5302841/1‑68 (MQ=11) ccGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCg > 1:4296157/1‑68 (MQ=35) ccGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCg > 1:5084842/1‑68 (MQ=35) ccGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCg > 1:3879565/1‑68 (MQ=35) ccGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCg > 1:378827/1‑68 (MQ=35) gCTGCAGCCCGGGGTAACCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGaa < 1:2384265/68‑1 (MQ=255) gCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAACCGAAAGGCTCAGTCGaa < 1:4882217/68‑1 (MQ=14) tGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGAGTGGGCCTTTCGTTTTATCtgttggtt > 1:5149955/1‑65 (MQ=0) tGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtgttggtt > 1:4924954/1‑65 (MQ=1) tGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACGGGGCCTTTCGTTTTATCtggtggtt > 1:2164643/1‑65 (MQ=1) tGCTAGAGGCATCAAATAAAACGAAAGGCTAAGTCTAAAGAACGGTCCTTACGTTTTATCtgttggtt > 1:4656750/1‑65 (MQ=1) cTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTGTATCAgttgttggt > 1:4880442/1‑65 (MQ=1) | AGCGCGGCCGCTGCAGCCCGGGGGATCCCATGGTACGCGTGCTAGAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTT‑‑‑ > KX077536/8082‑8187 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |