| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4532507 | 10 (0.180) | 75 (1.530) | 30/116 | 0.1 | 88.4% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 11 (0.220) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
Only 100 of 120 total aligned reads displayed.
AAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4532433‑4532507‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggggccaTTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTAT < CP009273/4532803‑4532737 AAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATT < 1:4769698/68‑1 AAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTG > 1:1076066/1‑68 AAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTG > 1:5257049/1‑68 AGAGAAGAGGTTTGATTTAACTTATTGATATTAAAGTTAAAAAAACAAATAATTACAGGACAATTGGG > 1:1180463/1‑68 AGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGCTAAAAAAACAAATAAATACAAGACAATTGGG > 1:5167909/1‑68 AGAGAAGAGGTTTGATTTAACTCATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGG < 1:4268466/68‑1 AGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGC < 1:4253602/68‑1 AGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGC < 1:3236777/68‑1 GAAGAGGTTTGATTTAACTTATTGAT‑ATAAAGTTAAAAAAACAAATATATACAAGACAATTGGGGCCA > 1:672890/1‑68 AGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAT < 1:2546924/68‑1 AGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAT < 1:4952166/68‑1 AGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAT > 1:5582760/1‑68 AGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAT < 1:4613094/68‑1 AGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAT < 1:3613024/68‑1 AGAGGTTTGATTTAACTTATTGATAATAAAGTAAAAAAAACAAATAAATACAAGACAATTGGGGCCAT < 1:3274013/68‑1 AGAGGTTTGATTTAACTTATAGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAT < 1:3266658/68‑1 AGAGGGTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAT > 1:1560223/1‑68 GAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATT < 1:2573523/68‑1 GGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTT > 1:1222273/1‑68 GGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTT > 1:4919612/1‑68 GGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTT > 1:1451745/1‑68 TTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGA > 1:1386576/1‑68 TTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGA < 1:2836208/68‑1 tATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTC < 1:2103506/67‑1 GATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTC < 1:689053/68‑1 ATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCA < 1:376003/68‑1 TTTAACTTATTGATAATAAAGTTAAAAAAACATATAAATACAAGACAATTGGGGCCATATTGACTCAT > 1:591752/1‑68 TTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACATGACAATTGGGGCCATTTTGACTCAT > 1:2162921/1‑68 TTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCAT < 1:5368549/68‑1 TTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCAT > 1:626582/1‑68 AACTTATTGATAATAAAGTTAAAAAAACAAATAAAATCAAGACAATTGGGGCCATTTTGACTCATAGA < 1:3099370/68‑1 CTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGG > 1:5304933/1‑68 CTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGG > 1:5613134/1‑68 TTATTGATAATAAAGTTAAAAAAACAAATAAATAGAAGCCAATTGGGGCCATTTTGACTCATAGAGGA > 1:1701264/1‑68 TTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGA > 1:2070220/1‑68 TGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGC > 1:3962234/1‑68 TGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGC > 1:2169975/1‑68 ATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCAT > 1:3978134/1‑68 ATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCAT > 1:2918072/1‑68 ATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCAT < 1:1348310/68‑1 ATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGC > 1:3810057/1‑68 ATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGC > 1:1134175/1‑68 aAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCG < 1:3343636/67‑1 TAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCG < 1:1202502/68‑1 TAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCG < 1:1148303/68‑1 AAATTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGG < 1:5491776/68‑1 AAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGA > 1:2071101/1‑68 AGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGAC > 1:1938830/1‑68 AAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTT > 1:4153732/1‑68 AAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTT > 1:4011325/1‑68 AATAAATACAAGACAATTGGGGCGATTTTGACTCATAGAGGAAAGCATCGCGTACAAACTTTTTCAGT < 1:2808675/68‑1 AATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGT < 1:3541198/68‑1 agATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTA < 1:5200239/66‑1 ATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATT > 1:1767243/1‑68 ATACAAGACAATTGGGGCCATTTTGACTCAAAGAGGAAAGCATCGCGGACAAACTATTACAGTTTATT > 1:3753559/1‑68 TACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTT > 1:1581807/1‑68 ACAAGACAATTGGGGCGATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTG > 1:665930/1‑68 ACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTG > 1:2694774/1‑68 ACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTG > 1:4746891/1‑68 ACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTG > 1:4695670/1‑68 ACAATTGGGGCCATTTTGACTCATAGAGGTAGGCATCGCGGACAACCTTTTTCAGTTTATTTGTTGGC > 1:1618930/1‑68 ACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGg > 1:4364809/1‑67 ACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGC > 1:5457716/1‑68 ACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGC < 1:1076098/68‑1 ACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGC > 1:4991220/1‑68 ACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGC < 1:1681567/68‑1 ACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGC < 1:2494210/68‑1 ACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGC > 1:3443306/1‑68 ACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGC < 1:2303421/68‑1 ACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTATCAGTTTATTTGTTGGC > 1:3723556/1‑68 ACAATTGGGGCCATTTAGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGC < 1:2315782/68‑1 ACAATTGCGGCCAATTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGC < 1:4676130/68‑1 AATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTATTCAGTTTATTTGTTGGCTT < 1:1910649/68‑1 tgcGGCCATTTTGACTCATATAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT < 1:3674723/65‑1 agcGGCCATCTTGACTCACAGAGGAAAGCAGCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT < 1:5135421/65‑1 TGGGGCCATTTTGACTCATGGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT < 1:2894053/68‑1 TGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT > 1:4983349/1‑68 TGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT < 1:1389836/68‑1 TGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT < 1:378084/68‑1 TGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT < 1:1167393/68‑1 TGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT < 1:4365814/68‑1 TGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT > 1:3722137/1‑68 TGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT < 1:4249398/68‑1 TGGGGCCATTTTGACTCATAGAGGAAAGCATCCCTGACAAACTTTATCAGTTTATTTGTTGGCTTAAT < 1:4633206/68‑1 TGGGGCCATTTTGACTCAGAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT > 1:1095616/1‑68 TGGGGCCATATTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAAT < 1:226416/68‑1 GGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATA > 1:5500477/1‑68 GGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATAT < 1:803629/68‑1 GGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATAT < 1:3892276/68‑1 GGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATAT < 1:578296/68‑1 GGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATAT < 1:640513/68‑1 GGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATAT < 1:4927332/68‑1 GGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATAT < 1:2987482/68‑1 GGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATAT < 1:4740835/68‑1 GGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATAT < 1:3834326/68‑1 GGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATAT < 1:3947154/68‑1 GGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATT > 1:1044082/1‑68 CCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCT > 1:4724389/1‑68 ATTTTGACTCATAGAGGAAAGCATCGCGGACAATCTTTTTCAGTTTATTTGTTGGCTTAATATTCTAT < 1:5040808/68‑1 ATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTAT < 1:4205496/68‑1 AAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4532433‑4532507‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggggccaTTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTAT < CP009273/4532803‑4532737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |