| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4532499 = | 10 (0.180) | 85 (1.730) | 33/116 | 0.1 | 89.6% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 11 (0.220) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
Only 100 of 197 total aligned reads displayed.
AAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAA > CP009273/4532432‑4532564 | tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:759637‑M1/1‑1 (MQ=255) acactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacattt < 1:2837427‑M1/2‑1 (MQ=255) aaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTG > 1:1076066‑M1/1‑68 (MQ=255) actttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgg < 1:2149833‑M1/4‑1 (MQ=255) actttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgg < 1:100268‑M1/4‑1 (MQ=255) ctttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg > 1:1186591‑M1/64‑68 (MQ=255) ctttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg > 1:1305958‑M1/64‑68 (MQ=255) agagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGG > 1:2135410‑M1/1‑68 (MQ=255) agagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGG > 1:631079‑M1/1‑68 (MQ=255) agaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGC < 1:4253602‑M1/68‑1 (MQ=255) gaagagGTTTGATTTAACTTATTGAT‑ATAAAGTTAAAAAAACAAATATATACAAGACAATTGGGGCCA > 1:672890‑M1/1‑68 (MQ=255) gttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa < 1:1100605‑M1/9‑1 (MQ=255) ttttgtacacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaa > 1:1435154‑M1/59‑68 (MQ=255) ttttgtaaaggagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaa > 1:4715679‑M1/59‑68 (MQ=255) ttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaa < 1:1809054‑M1/10‑1 (MQ=255) ttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaa < 1:5258615‑M1/10‑1 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:2327860/68‑1 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAt > 1:5582760‑M1/1‑67 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAt < 1:4952166‑M1/68‑2 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAt < 1:4613094‑M1/68‑2 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAt < 1:1134667‑M1/68‑2 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTAAAAAAAACAAATAAATACAAGACAATTGGGGCCAt < 1:3274013‑M1/68‑2 (MQ=255) tttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaaa < 1:1825641‑M1/11‑1 (MQ=255) gagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAtt < 1:2573523‑M1/68‑3 (MQ=255) ttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAAc < 1:2542878‑M1/12‑1 (MQ=255) ttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAAc < 1:1764236‑M1/12‑1 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt > 1:1451745‑M1/1‑64 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt > 1:4919612‑M1/1‑64 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt > 1:1222273‑M1/1‑64 (MQ=255) gtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTg < 1:196043‑M1/14‑1 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:5390431/68‑1 (MQ=255) taaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGt > 1:4316948‑M1/54‑68 (MQ=255) taaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGt > 1:3257654‑M1/54‑68 (MQ=255) taaacgaggttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGt > 1:3353227‑M1/54‑68 (MQ=255) taaacgactttgacagccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGt > 1:1151296‑M1/54‑68 (MQ=255) aaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTc < 1:5619404‑M1/16‑1 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactc < 1:5523104‑M1/68‑10 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactc < 1:2818530‑M1/68‑10 (MQ=255) aTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactca < 1:376003‑M1/68‑11 (MQ=255) tttAACTTATTGATAATAAATTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat < 1:922812‑M1/68‑12 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACATATAAATACAAGACAATTGGGGCCAtattgactcat > 1:591752‑M1/1‑57 (MQ=255) gagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCata > 1:3380845‑M1/49‑68 (MQ=255) ttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat < 1:2184967/68‑1 (MQ=255) agtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCatat > 1:5156115‑M1/48‑68 (MQ=255) agtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCatat > 1:5173106‑M1/48‑68 (MQ=255) agtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTCTCCatat < 1:2939923‑M1/21‑1 (MQ=255) gtttgcctgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATc > 1:5366496‑M1/47‑68 (MQ=255) gtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATc > 1:3828954‑M1/47‑68 (MQ=255) gtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATc > 1:3698343‑M1/47‑68 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAAACAAATAAAATCAAGACAATTGGGGCCAttttgactcataga < 1:3099370‑M1/68‑15 (MQ=255) ttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCat > 1:3876675‑M1/45‑68 (MQ=255) ttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCat > 1:3779138‑M1/45‑68 (MQ=255) ttcactgcaaacactgcacagttttcccccacaagatgaaacatTTGGGGCCAAACTGTCCATATCat > 1:5069094‑M1/45‑68 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagagg > 1:5304933‑M1/1‑52 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagagg > 1:5037611‑M1/1‑52 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata > 1:3330765/1‑68 (MQ=255) actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaa > 1:5612237‑M1/42‑68 (MQ=255) tgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaata > 1:186917‑M1/40‑68 (MQ=255) tGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagc > 1:3962234‑M1/1‑47 (MQ=255) tGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagc > 1:2169975‑M1/1‑47 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcat < 1:1348310‑M1/68‑24 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcat > 1:2918072‑M1/1‑45 (MQ=255) cactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTAc < 1:159267‑M1/35‑1 (MQ=255) cactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTAc < 1:4807169‑M1/35‑1 (MQ=255) actgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACg < 1:4401288‑M1/36‑1 (MQ=255) ctgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt < 1:37261‑M1/37‑1 (MQ=255) ctgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt < 1:3035079‑M1/37‑1 (MQ=255) aaaTTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgg < 1:5491776‑M1/68‑29 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt < 1:4933831/68‑1 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgga > 1:2071101‑M1/1‑39 (MQ=255) aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggac > 1:1938830‑M1/1‑38 (MQ=255) acagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt < 1:2661210‑M1/41‑1 (MQ=255) acagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt < 1:3502041‑M1/41‑1 (MQ=255) acagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt < 1:1502637‑M1/41‑1 (MQ=255) acagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt < 1:4452306‑M1/41‑1 (MQ=255) acagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt < 1:4426553‑M1/41‑1 (MQ=255) acagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt < 1:4086813‑M1/41‑1 (MQ=255) agttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttttt > 1:2349353‑M1/26‑68 (MQ=255) tttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct < 1:3227133‑M1/46‑1 (MQ=255) aaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttt > 1:4011325‑M1/1‑30 (MQ=255) cccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc > 1:205936‑M1/18‑68 (MQ=255) ccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCa > 1:2705783‑M1/17‑68 (MQ=255) ccaaaagatgaaacatTTGGCGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCa > 1:4491827‑M1/17‑68 (MQ=255) aataaataCTAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagt < 1:4692743‑M1/68‑44 (MQ=255) aataaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagt < 1:3541198‑M1/68‑44 (MQ=255) agatacaAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagttta < 1:5200239‑M1/66‑47 (MQ=255) aCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttg > 1:4746891‑M1/1‑18 (MQ=255) gACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagattatttgttgg < 1:1580960‑M1/68‑55 (MQ=255) acatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaa < 1:4824434‑M1/64‑1 (MQ=255) aCAATTGGGGCCAttttgactcatagaggtaggcatcgcggacaacctttttcagtttatttgttggc > 1:1618930‑M1/1‑13 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc < 1:2494210‑M1/68‑56 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc > 1:5457716‑M1/1‑13 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc > 1:3443306‑M1/1‑13 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc < 1:1681567‑M1/68‑56 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc < 1:4846883‑M1/68‑56 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc < 1:2303421‑M1/68‑56 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaa > 1:2507448/1‑68 (MQ=255) aCAAATGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc < 1:3747776‑M1/68‑56 (MQ=255) catTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaa < 1:1125406‑M1/65‑1 (MQ=255) aaTTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttattcagtttatttgttggctt < 1:1910649‑M1/68‑58 (MQ=255) | AAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAA > CP009273/4532432‑4532564 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |