| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4532499 = | 10 (0.180) | 85 (1.730) | 33/116 | 0.1 | 89.6% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 11 (0.220) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
Only 100 of 114 total aligned reads displayed.
AGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTAC > CP009273/4532748‑4532880 | tttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATg < 1:1125406‑M2/3‑1 (MQ=255) ttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGt < 1:4824434‑M2/4‑1 (MQ=255) ttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagattggccccaaATGt < 1:1871080‑M2/4‑1 (MQ=255) aatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGttt > 1:5263211‑M2/63‑68 (MQ=255) tttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATc > 1:245758‑M2/59‑68 (MQ=255) ttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCt < 1:4820202‑M2/11‑1 (MQ=255) tgcttgagaaaaaatacgtaacttatttatgatatggacagtttggcgccaaATGTTTCATCTTTTgg > 1:4491827‑M2/53‑68 (MQ=255) tgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTgg > 1:2705783‑M2/53‑68 (MQ=255) tgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCGTTTgg > 1:1456345‑M2/53‑68 (MQ=255) gcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTggg > 1:5592057‑M2/52‑68 (MQ=255) gcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTggg > 1:4726833‑M2/52‑68 (MQ=255) gcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTggg > 1:205936‑M2/52‑68 (MQ=255) gcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTggg < 1:2951445‑M2/17‑1 (MQ=255) cttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTgggg > 1:3421512‑M2/51‑68 (MQ=255) cttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTgggg > 1:3851787‑M2/51‑68 (MQ=255) agaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaaa < 1:3227133‑M2/22‑1 (MQ=255) agaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaaa < 1:1818858‑M2/22‑1 (MQ=255) aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaa < 1:4412433/68‑1 (MQ=255) aaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAATTGGCCCCAAATGTTTCATCTTTTGGGGGaaaa > 1:4015802/1‑68 (MQ=255) aaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAAc < 1:3526589‑M2/24‑1 (MQ=255) aaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACt > 1:2349353‑M2/44‑68 (MQ=255) aaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgt < 1:2661210‑M2/27‑1 (MQ=255) aaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgt < 1:443224‑M2/27‑1 (MQ=255) aaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgt < 1:377797‑M2/27‑1 (MQ=255) aaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgt < 1:3502041‑M2/27‑1 (MQ=255) aaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgt < 1:4452306‑M2/27‑1 (MQ=255) aaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgt < 1:1502637‑M2/27‑1 (MQ=255) aaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgt < 1:4086813‑M2/27‑1 (MQ=255) aaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgt < 1:4426553‑M2/27‑1 (MQ=255) aatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgtg > 1:2174808‑M2/41‑68 (MQ=255) tacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCa > 1:2526248‑M2/39‑68 (MQ=255) acgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAg < 1:3035079‑M2/31‑1 (MQ=255) acgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAg < 1:37261‑M2/31‑1 (MQ=255) acgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAg < 1:1828911‑M2/31‑1 (MQ=255) cgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAgt < 1:2329857‑M2/32‑1 (MQ=255) gtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAgtg < 1:1951566‑M2/33‑1 (MQ=255) gtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAgtg < 1:4807169‑M2/33‑1 (MQ=255) gtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAgtg < 1:159267‑M2/33‑1 (MQ=255) gtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAgtg < 1:4922115‑M2/33‑1 (MQ=255) gtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAgtg < 1:2145143‑M2/33‑1 (MQ=255) gcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAgtg < 1:4431495/68‑1 (MQ=255) gcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAgtg < 1:1610454/68‑1 (MQ=255) tatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCa > 1:186917‑M2/30‑68 (MQ=255) tttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt > 1:5612237‑M2/28‑68 (MQ=255) tatgatatgtacagtttggccccatATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa > 1:2937323‑M2/26‑68 (MQ=255) tatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa > 1:5440125‑M2/26‑68 (MQ=255) tatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa > 1:3369778‑M2/26‑68 (MQ=255) atgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaa > 1:3876675‑M2/25‑68 (MQ=255) atgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaa > 1:5461151‑M2/25‑68 (MQ=255) atgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaa > 1:5338007‑M2/25‑68 (MQ=255) atgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaa > 1:3779138‑M2/25‑68 (MQ=255) atgatatggacagtttggccccaaATGTTTCATCTTGTGGGGGAAAACTGTGCAGTGTTTGCAGTGaa > 1:5069094‑M2/25‑68 (MQ=255) tctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa > 1:4798885/1‑68 (MQ=255) gatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAc > 1:3698343‑M2/23‑68 (MQ=255) gatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGGCAAAc > 1:5366496‑M2/23‑68 (MQ=255) tATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt < 1:4684661/68‑1 (MQ=255) atatggagagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt < 1:2939923‑M2/47‑1 (MQ=255) atatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt > 1:5173106‑M2/22‑68 (MQ=255) atatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt > 1:5156115‑M2/22‑68 (MQ=255) atatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt > 1:374075‑M2/22‑68 (MQ=255) tatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTc > 1:3380845‑M2/21‑68 (MQ=255) gacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGttt < 1:5619404‑M2/52‑1 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCTGTCAAAGTCGTTTa > 1:1151296‑M2/16‑68 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAACCTCGTTTa > 1:3353227‑M2/16‑68 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa > 1:4316948‑M2/16‑68 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa > 1:3257654‑M2/16‑68 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa > 1:565190‑M2/16‑68 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGGTTa > 1:3481933‑M2/16‑68 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGCCAGTCAAACTAGTTTa > 1:3932351‑M2/16‑68 (MQ=255) cagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTac < 1:196043‑M2/54‑1 (MQ=255) cagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTac < 1:2838349‑M2/54‑1 (MQ=255) gtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa < 1:2048104‑M2/56‑1 (MQ=255) gtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa < 1:1764236‑M2/56‑1 (MQ=255) gtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa < 1:2542878‑M2/56‑1 (MQ=255) tttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaa < 1:1825641‑M2/57‑1 (MQ=255) ttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa > 1:5179879‑M2/11‑68 (MQ=255) ttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa < 1:1809054‑M2/58‑1 (MQ=255) ttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa < 1:1444749‑M2/58‑1 (MQ=255) ttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa < 1:5258615‑M2/58‑1 (MQ=255) ttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa > 1:1118139‑M2/11‑68 (MQ=255) ttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCCTTTacaaaa > 1:4715679‑M2/11‑68 (MQ=255) aTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa > 1:58751/1‑68 (MQ=255) tggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaac < 1:1100605‑M2/59‑1 (MQ=255) gccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAATCTCGTTTacaaaacaa < 1:2636835‑M2/61‑1 (MQ=255) gccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaa > 1:4942195‑M2/8‑68 (MQ=255) cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg > 1:1186591‑M2/6‑68 (MQ=255) cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg > 1:1305958‑M2/6‑68 (MQ=255) cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg > 1:1345686‑M2/6‑68 (MQ=255) ccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgt < 1:911270‑M2/64‑1 (MQ=255) ccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgt < 1:100268‑M2/64‑1 (MQ=255) ccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgt < 1:5494002‑M2/64‑1 (MQ=255) ccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgt < 1:1626084‑M2/64‑1 (MQ=255) ccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgt < 1:2149833‑M2/64‑1 (MQ=255) ccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgt < 1:4462209‑M2/64‑1 (MQ=255) ccaaATGTTTCATCTTATGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgt < 1:3280250‑M2/64‑1 (MQ=255) ccaaAGGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgt < 1:5077323‑M2/64‑1 (MQ=255) aaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtgt < 1:2837427‑M2/66‑1 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa < 1:759637‑M2/67‑1 (MQ=255) aTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTaa > 1:4098701/1‑67 (MQ=255) aTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTAc > 1:143914/1‑68 (MQ=255) | AGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTAC > CP009273/4532748‑4532880 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |