| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4034000 = | 63 (1.110) | 1764 (2.020) +CTGTTGTT |
18/118 | 0.7 | 98.5% | intergenic (+4/+266) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | KX077536 | 1 = | 0 (0.000) | intergenic (–/‑1098) | –/unknown | –/BLA | |||||
Only 100 of 1905 total aligned reads displayed.
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGATATATTCCGCTTCCT > KX077536/1‑68 | cgacaaacaacagataaaacgaaagccccagtctttcgactgagcctttcgttttatctgttgtttgt < 1:4486462‑M2/3‑1 (MQ=255) gactgagcctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCgccgcc > 1:10006‑M2/29‑68 (MQ=255) gggctttcgttttttctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGa < 1:1199699‑M2/45‑1 (MQ=255) gggctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGa < 1:2509084‑M2/45‑1 (MQ=255) gcctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAc > 1:4083058‑M2/23‑68 (MQ=255) gcctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAc > 1:487853‑M2/23‑68 (MQ=255) gcctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAc < 1:5079837‑M2/46‑1 (MQ=255) gcctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAc > 1:2327043‑M2/23‑68 (MQ=255) gcctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAc > 1:4604759‑M2/23‑68 (MQ=255) gcctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAc > 1:2885972‑M2/23‑68 (MQ=255) gcctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAc > 1:3082111‑M2/23‑68 (MQ=255) gcctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAc > 1:182353‑M2/23‑68 (MQ=255) gcctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAc < 1:1728929‑M2/46‑1 (MQ=255) gcctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAc > 1:3293798‑M2/23‑68 (MQ=255) gcctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAc > 1:364390‑M2/23‑68 (MQ=255) gcctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAc < 1:597435‑M2/46‑1 (MQ=255) gcctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAc > 1:3355264‑M2/23‑68 (MQ=255) gcctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAc < 1:1273975‑M2/46‑1 (MQ=255) gcctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAc > 1:82155‑M2/23‑68 (MQ=255) gcctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCAGCCGCCCTAGAc > 1:4811119‑M2/23‑68 (MQ=255) gcctttcgttttatctgttgatTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAc < 1:5180152‑M2/46‑1 (MQ=255) gcctttcgttttatctgatgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAc > 1:3584728‑M2/23‑68 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGTACAAATCCGCCGCCCTAGAcc > 1:4778993‑M2/22‑68 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc > 1:2916519‑M2/22‑68 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc > 1:3458437‑M2/22‑68 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc > 1:4554450‑M2/22‑68 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc > 1:3839603‑M2/22‑68 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc > 1:3414606‑M2/22‑68 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc > 1:4347201‑M2/22‑68 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc < 1:3689‑M2/47‑1 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc > 1:3930611‑M2/22‑68 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc > 1:1978790‑M2/22‑68 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc > 1:699577‑M2/22‑68 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc > 1:151064‑M2/22‑68 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc > 1:156365‑M2/22‑68 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc > 1:5630328‑M2/22‑68 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc > 1:5589226‑M2/22‑68 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc > 1:5552393‑M2/22‑68 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc > 1:1392538‑M2/22‑68 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc > 1:2082375‑M2/22‑68 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc > 1:5222698‑M2/22‑68 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc > 1:2212605‑M2/22‑68 (MQ=255) cctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc > 1:865145‑M2/22‑68 (MQ=255) cctttcgttttatctgtggttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc > 1:4740131‑M2/22‑68 (MQ=255) cctttcgttttatcaggtgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc < 1:1152307‑M2/47‑1 (MQ=255) cctttcgctttatctgttgatTGTCGGTGCACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc < 1:5512236‑M2/47‑1 (MQ=255) cctatcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGAcc < 1:2384753‑M2/47‑1 (MQ=255) ctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCt < 1:31868‑M2/48‑1 (MQ=255) ctttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCt < 1:3888975‑M2/48‑1 (MQ=255) cgttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCt < 1:4677198‑M2/48‑1 (MQ=255) tttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTa > 1:2045039‑M2/20‑68 (MQ=255) cagcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTa < 1:528684‑M2/49‑1 (MQ=255) ttcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAg < 1:950‑M2/50‑1 (MQ=255) tcgttttatctgttgttTGTCGGTGATCGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAgg < 1:911895‑M2/51‑1 (MQ=255) tcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAgg < 1:1791753‑M2/51‑1 (MQ=255) tcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAgg < 1:3508414‑M2/51‑1 (MQ=255) tcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAgg > 1:1893224‑M2/18‑68 (MQ=255) tcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAgg < 1:4031610‑M2/51‑1 (MQ=255) tcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAgg < 1:1104992‑M2/51‑1 (MQ=255) tcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAgg > 1:5469267‑M2/18‑68 (MQ=255) tcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAgg < 1:5371725‑M2/51‑1 (MQ=255) tcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAgg < 1:2157584‑M2/51‑1 (MQ=255) tcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAgg < 1:4291258‑M2/51‑1 (MQ=255) tcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAgg > 1:1450517‑M2/18‑68 (MQ=255) tcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAgg < 1:2622771‑M2/51‑1 (MQ=255) tcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCAAGACCTAgg > 1:1057033‑M2/18‑68 (MQ=255) tcgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAAACCGCCGCCCTAGACCTAgg > 1:3019520‑M2/18‑68 (MQ=255) cgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAggg > 1:2126384‑M2/17‑68 (MQ=255) cgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAggg > 1:246763‑M2/17‑68 (MQ=255) cgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAggg > 1:1636514‑M2/17‑68 (MQ=255) cgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAggg < 1:2736105‑M2/52‑1 (MQ=255) cgttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATACGCCGCCCTAGACCTAggg > 1:1697934‑M2/17‑68 (MQ=255) cgttttatctgttgtaTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAggg > 1:2823825‑M2/17‑68 (MQ=255) gttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACctagcgc < 1:4410323‑M2/53‑4 (MQ=255) gttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGa < 1:4646445‑M2/53‑1 (MQ=255) gttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGa < 1:2785573‑M2/53‑1 (MQ=255) gttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGa < 1:2975895‑M2/53‑1 (MQ=255) gttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGa < 1:376626‑M2/53‑1 (MQ=255) gttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGa < 1:5004643‑M2/53‑1 (MQ=255) gttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGa < 1:3992157‑M2/53‑1 (MQ=255) gttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGa < 1:4127047‑M2/53‑1 (MQ=255) gttttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGa < 1:5420203‑M2/53‑1 (MQ=255) gttctatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGa < 1:1595677‑M2/53‑1 (MQ=255) ttatctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGatat < 1:652795‑M2/56‑1 (MQ=255) ttatctgttgttTGTCGGTGAACGCGCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGatat < 1:2249123‑M2/56‑1 (MQ=255) ttatctgttgttTGTCGGAGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGatat < 1:2424450‑M2/56‑1 (MQ=255) ttatctgtcgttTGTCGGGGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGCCCTAGGGatat < 1:4178135‑M2/56‑1 (MQ=255) atctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGatatat > 1:1340078‑M2/11‑68 (MQ=255) tctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGATATAtt < 1:2666814‑M2/59‑1 (MQ=255) ctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGATATATTc < 1:5259241‑M2/60‑1 (MQ=255) ctgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGATATATTc > 1:5133092‑M2/9‑68 (MQ=255) tgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGATATATTcc < 1:494693‑M2/61‑1 (MQ=255) tgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGATATATTcc > 1:77268‑M2/8‑68 (MQ=255) tgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGATATATTcc > 1:5323728‑M2/8‑68 (MQ=255) tgttgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGATATATTcc < 1:3232873‑M2/61‑1 (MQ=255) tgttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGATATATTCCGCt > 1:4233525‑M2/5‑68 (MQ=255) gttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGATATATTCCGCtt > 1:2571080‑M2/4‑68 (MQ=255) gttTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGATATATTCCGCtt > 1:314338‑M2/4‑68 (MQ=255) tTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGATATATTCCGCTTcc > 1:356485‑M2/2‑68 (MQ=255) tGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGATATATTCCGCTTCCt < 1:4446506/68‑1 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGATATATTCCGCTTCCT > KX077536/1‑68 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |