New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1873039	0 (0.000)	48 (0.770)	38/388	0.4	100%	coding (999/1491 nt)	dgcJ	putative diguanylate cyclase DgcJ
	?	NC_000913	1978503 =	NA (NA)					noncoding (768/768 nt)	IS1	repeat region

ACAAAAACAATCTGCGGAATATCTTTTATACTCATGACCGCCCTCTCCTCTGGCG‑‑TTTTCTCAATGTCACGCTAACCGATACCGATTCGGGGCGCGACATTATCATCAACCAGAGC‑GAAGATAATCTGTTCCAGTATGTCAG‑TTACGTCCA‑TGACTTACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATA‑TTC‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1872762‑1873039 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCTGATTACGTG‑CAGC‑TTTCCCTTCAGGC‑GGGATTCATACAGCGGCCAGCCAT‑CCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACA  >  NC_000913/1978503‑1978812                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACAAAAACAATCTGCGGAATATCTTTTATACTCATGACCGCCCTCTCCTCTGGCG‑‑TTTTCTCAATGTCACGCTAACCGATACCGATTCGGGGCGCGACATTATCATCAACCAGAGC‑GAAGATAATCTGTTCCAGTATGTCAG‑TTACGTCCA‑TGACTTACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATA‑TTCTTTTACTTTATCACGTC‑TTCGTGGAAAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGG                                                                                                                                                                                                                                                                                                                                >  1:1181205/1‑282       ACAATCTGCGGAATATC‑TTTATACTCATGACCGCCCTCTCCTCTGGCG‑‑TTTTCTCAATGTCACGCTAACCGATACCGATTCGGGGCGCGACATTATCATCAACCAGAGC‑GAAGATAATCTGTTCCAGTATGTCAG‑TTACGTCCA‑TGACTTACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATA‑TTC‑TTTACTTTATCACGTCTTTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTGT‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACG                                                                                                                                                                                                                                       >  1:353067/1‑359                      TCTTTTATACTCATGACCGCCCTCTCCTCTGGCGTTTTTTCTCAATGTCACGCTAACCGATACCGATTCGGGGCGCGACATTATCATCAACCAGAGC‑GAAGATAATCTGTTCCAGTATGTCAG‑TTACGTCCA‑TGACTTACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATA‑TTC‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGT‑ATGACTCCAACTT‑ATT                                                                                                                                                                                                                                                                                                             >  1:353068/1‑278                                              TCCTCTGGCG‑‑TTTTCTCAATGTCACGCTAACCGATACCGATTCGGGGCGCGACATTATCATCAACCAGAGC‑GAAGATAATCTGTTCCAGTATGTCAG‑TTACGTCCA‑TGACTTACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATA‑TTCTTTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGT                                                                                                                                                                                                                                                                                                       >  1:1181210/1‑260                                              TCCTCTGGCG‑‑TTTTCTCAATGTCACGCTAACCGATACCGATTCGGGGCGCGACATTATCATCAACCAGAGC‑GAAGATAATCTGTTCCAGTATGTCAG‑TTACGTCCA‑TGACTTACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATA‑TTC‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCA                                                                                                                                                                                                                                                                                        <  1:1181207/271‑1                                                           TTTCTCAATGTCACGCTAACCGATACCGATTCGGGGCGCGACATTATCATCAACCAGAGC‑GAAGATAATCTGTTCCAGTATGTCAG‑TTACGTCCA‑TGACTTACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATA‑TTCTTTTACTTTATCACGTCTTTCGTGGAAAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTtgtca                                                                                                                                                                                                                                                               >  1:1181212/1‑282                                                                              CCGATACCGATTCGGGGCGCGACATTATCATCAACCAGAGC‑GAAGATAATCTGTTCCAGTATGTCAG‑TTACGTCC‑‑TGACTTACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATA‑TTC‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCGTTT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGAT                                                                                                                                                                                                                                                 >  1:1181215/1‑279                                                                               CGATACCGATTCGGGGCGCGACATTATCATCAACCAGAGCAGAAGATAATCTGTTCCAGTATGTCAG‑TTACGTCCATTGACTTACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATA‑TTC‑‑TTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGA‑GGCG‑TT‑AA‑TTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT                                                                                                                                                                                                                                                                                     <  1:353074/242‑1                                                                                   ACCGATTCGGGGCGCGACATTATCATCAACCAGAGC‑GAAGATAATCTGTTCCAGTATGTCAG‑TTACGTCCA‑TGACTTACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATA‑TTC‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACG                                                                                                                                                                                                                                       <  1:1181211/284‑1                                                                                     CGATTCGGGGCGCGACATTATCATCAACCAGAGC‑GAAGATAATCTGTTCCAGTATGTCAG‑TTACGTCCA‑TGACTTACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATA‑TTC‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCAT                                                                                                                                                                                                                                                               <  1:1181213/258‑1                                                                                     CGATTCGGGGCGCGACATTATCATCAACCAGAGC‑GAAGATAATCTGTTCCAGTATGTCAG‑TTACGTCCA‑TGACTTACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATA‑TTC‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATG                                                                                                                                                                                                                                                                                            >  1:353075/1‑230                                                                                                     ATTATCATCAACCAGAGC‑GAAGATAATCTGTTCCAGTATGTCAG‑TTACGTCCA‑TGACTTACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATA‑TTC‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGT                                                                                                                                                                                                                >  1:353076/1‑289                                                                                                               ACCAGAGC‑GAAGATAATCTGTTCCAGTATGTCAGATTACGTCCA‑TGACTTACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATA‑TTC‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TTAAATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTTAATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCC                                                                                                                                                                                                                                                                             <  1:1181216/221‑1                                                                                                                         AAGATAATCTGTTCCAGTATGTCAG‑TTACGTCCA‑TGACTTACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATA‑TTC‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑‑TTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCTGATT‑CGTG‑CAGC‑TTTCCCTTCAGGC‑GGGATTCATACAGCGGCCAGCC                                                                                                 >  1:353079/1‑375                                                                                                                            ATAATCTGTTCCAGTATGTCAG‑TTACGTCCA‑TGACTTACCGGGCGGCATTTCGTGTCTCGTTATCCATTGATATTTCTTTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGATTTTTGACGGCG‑TT‑AATTTT‑GCTGAATA‑GGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTG‑CAGGTGCTGCCTCAGATTCAGGTTAT                                                                                                                                                                                    <  1:568738/297‑1                                                                                                                            ATAATCTGTTCCAGTATGTCAG‑TTACGTCCA‑TGACTTACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATA‑TTC‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCA‑GGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGC                                                                                                                                                                                                    <  1:742162/278‑1                                                                                                                                                         CCA‑TGACTTACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATATTTC‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTGT‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTG‑CAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCT                                                                                                                                                    <  1:568735/299‑1                                                                                                                                                                 TTACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATA‑TTC‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTGT‑‑TTTTATGTTCAGAT‑AATGC                                                                                                                                                                                                                                                                               <  1:353081/170‑1                                                                                                                                                                   ACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATA‑TTC‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTG                                                                                                                                                                                                                                             >  1:1181219/1‑201                                                                                                                                                                   ACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATA‑TTC‑TTTACTTTATCACGTC‑TTCGTGG‑‑AAAGCG‑TTCGTGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACTGATTTTGAGAACGTCAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTA                                                                                                                                                                                     >  1:353083/1‑257                                                                                                                                                                           GCA‑TTCGTGTCTCGTTATCCATTGATA‑TTC‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT                                                                                                                                                                                                                                                                                     <  1:1181217/154‑1                                                                                                                                                                             A‑TTCGTGTCTCGTTATCCATTGATA‑TTC‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCTGATT‑CGTG‑CAGC‑TTTCCCTTCAGGC‑GGGA‑TCATACAGCGGCCAGCC                                                                                                 >  1:353084/1‑325                                                                                                                                                                                        CGTTATCCATTGATA‑TTC‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTC                                                                                                                                                                             <  1:1468505/245‑1                                                                                                                                                                                            ATCCATTGATA‑TTC‑TTTACTTTATCACGTCTTTCGTGG‑AAAAGCGTTTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCTGATTACGTG‑CAGC‑TTTCCCTTCAGGC‑GGGATTCATACA                                                                                                           >  1:30855/1‑305                                                                                                                                                                                            ATCCATTGATA‑TTC‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCTGATTACGTG‑CAGC                                                                                                                                      >  1:1181221/1‑278                                                                                                                                                                                            ATCCATTGATA‑TTC‑TTTACTTTATCACGTC‑TTCGTGG‑‑AAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTTAGCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGATGAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGTCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCTGATTACGTG‑CAGC‑TTTCCCTTCAGGC‑GGGATTCATACAGCG                                                                                                        >  1:30865/1‑307                                                                                                                                                                                                        TTC‑TTTACTTTATCACGTC‑TTCGTGG‑‑AAAGCG‑TTC‑TGTTCTGGA‑‑TTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAG                                                                                                                                                                                                                                                           >  1:353085/1‑150                                                                                                                                                                                                         TC‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCT                                                                                                                                                                              >  1:353086/1‑228                                                                                                                                                                                                          C‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGT‑CCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCTGATTACGTG‑CAGC‑TTTCCCTTCAGGC‑GGGATTCATACAGCGGCCAGCCAT‑CCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCA                                                    >  1:30866/1‑343                                                                                                                                                                                                               ACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGA‑TTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTTGCTGATTACGTG‑CAGC‑TTTCCCTTCAGGC‑GGGA                                                                                                                   >  1:747064/1‑278                                                                                                                                                                                                                        cgtctTTCGTGGAAAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCGTTT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTGT‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCTGATTACGTG‑CAGC‑TTTCCCTTCAGGC‑GGGATTCATACAGCGGCCAGCCAT‑CCGTCATCCATATCACCAC‑TCAAA‑GGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACA  >  1:568698/6‑383                                                                                                                                                                                                                              TCGTGG‑AAAAGCG‑TTC‑TGTTCTGGATTTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTGTTTTTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTG‑CAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCTGATTACGTG‑CAGC‑TTTCCCTTCAGGC‑GGGATTCA                                                                                                               <  1:568730/271‑1                                                                                                                                                                                                                                GTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCTGATTACGTG‑CAGC‑TTTCCCTTCAGGC‑GGGATTCATACAGCGGCCAGCCAT‑CCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCG       >  1:2097/1‑369                                                                                                                                                                                                                                        AGCG‑TTC‑TGTTCTGGA‑‑TTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAAC‑T‑ATTGATAGTG‑‑‑‑TTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTG‑CAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCTGATTA                                                                                                                                               <  1:568733/226‑1                                                                                                                                                                                                                                                     CTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCTGATTACGTG‑CAGCTTTTCCCTT                                                                                                                             >  1:2098/1‑236                                                                                                                                                                                                                                                      tcttggatttgaGGCG‑TT‑AATTTT‑GCTGAATA‑GGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTG‑CAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCTGATTACGTG‑CAGC‑TTTCCCTTCAGGC‑GGGATTCATAC                                                                                                            <  1:568729/237‑1                                                                                                                                                                                                                                                                     G‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAAC‑T‑ATTGATAGTG‑‑‑‑TTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTG‑CAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCTGATTACGTGCCAGC‑TTTCCCTTCAGGCGGGGATTCATACAGCGGCCAGCCATCCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCAT                                                   <  1:568716/292‑1                                                                                                                                                                                                                                                                        taAATTTT‑GCTGAATA‑GGTGCGGATGCA‑GGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCTGATTA                                                                                                                                               <  1:742160/199‑1                                                                                                                                                                                                                                                                          AATTTT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCTGATTACGTG‑CAGC‑TTTCCCTTCAGGC‑GGGATTCATACAGCGGCCAGCCAT‑CCGTCATCCATATCACCACTCAAAAGGGTGACAGCAGGCTCA                                                    >  1:568711/1‑288                                                                                                                                                                                                                                                                            TTTT‑GCTGAATA‑GGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTGTT‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAG                                                                                                                                                                                                                                           <  1:568743/109‑1                                                                                                                                                                                                                                                                              TT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCTGATTACGTG‑CAGC‑TTTCCCTTCAGGC‑GGGATTCATACAGCGGCCAGCCAT‑CCGTCATCCATATCACCACGTCAAAGGGTGACAGCAG                                                         >  1:708290/1‑279                                                                                                                                                                                                                                                                              TT‑GCTGAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCTGATTACGTG‑CAGC‑TTTCCCTTCAGGC‑GGGATTCATACAGCGGCCAGCCAT‑CCGTCATCCATA                                                                                  >  1:708289/1‑254                                                                                                                                                                                                                                                                                    GAATATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTT                                                                                                                                                                                                                                                                    <  1:568747/76‑1                                                                                                                                                                                                                                                                                       aATGGTGCGGATGCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCA                                                                                                                                                                                                                                                            >  1:128803/2‑81                                                                                                                                                                                                                                                                                                GATGCACGGTAATGACTCCAACTT‑ATTGATAGTGT‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTG‑CAGGTGCTGCCTCA                                                                                                                                                                                                <  1:128799/132‑1                                                                                                                                                                                                                                                                                                GATGCACGGTAATGACTCCAAC‑T‑ATTGATAGTGT‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTG‑CAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCTGATT                                                                                                                                                <  1:568734/178‑1                                                                                                                                                                                                                                                                                                   GCACGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTt                                                                                                                                                                                                                                                                                              <  1:128815/36‑2                                                                                                                                                                                                                                                                                                      CGGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGT                                                                                                                                                                                       <  1:1468506/135‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACAAAAACAATCTGCGGAATATCTTTTATACTCATGACCGCCCTCTCCTCTGGCG‑‑TTTTCTCAATGTCACGCTAACCGATACCGATTCGGGGCGCGACATTATCATCAACCAGAGC‑GAAGATAATCTGTTCCAGTATGTCAG‑TTACGTCCA‑TGACTTACCGGGCGGCA‑TTCGTGTCTCGTTATCCATTGATA‑TTC‑TTTACTTTATCACGTC‑TTCGTGG‑AAAAGCG‑TTC‑TGTTCTGGA‑TTTTGACGGCG‑TT‑AATTTT‑GCTGAATATGGTGCGGATGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1872762‑1873039 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTT‑ATTGATAGTG‑‑‑TTTTATGTTCAGAT‑AATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGC‑TTGCTGATTACGTG‑CAGC‑TTTCCCTTCAGGC‑GGGATTCATACAGCGGCCAGCCAT‑CCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACA  >  NC_000913/1978503‑1978812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.