New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4060270	15 (0.240)	14 (0.230)	13/388	2.8	45.9%	intergenic (+40/‑177)	bipA/yihL	ribosome‑dependent GTPase, ribosome assembly factor/putative transcriptional regulator YihL
	?	NC_000913	4060276 =	18 (0.290)					intergenic (+46/‑171)	bipA/yihL	ribosome‑dependent GTPase, ribosome assembly factor/putative transcriptional regulator YihL

CCTGACTGTAAACTGCCTGACCGGTAAGAAACTGACCAACATGCGTGCTTCCGGTACTGACGAAGCCGTTGTTCTGGTTCCGCCTATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGT‑AAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATT‑AATTTCG‑TTTTTTAG‑TCAT‑AAAAAACCTGCCAGCGATGGCA‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4060002‑4060270 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATACGCCGTTAATTGCTTTC‑TTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAA  >  NC_000913/4060276‑4060546                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CCTGACTGTAAACTGCCTGACCGGTAAGAAACTGACCAACATGCGTGCTTCCGGTACTGACGAAGCCGTTGTTCTGGTTCCGCCTATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGT‑AAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATT‑AATTTCG‑TTTTTTAG‑TCAT‑AAAAAACCTGCCAGCGATGGCA‑G‑‑TTTTTGCCTGTCGTGAGCGCACACC                                                                                                                                                                                                                                                          <  1:1535493/294‑1                      CGGTAAGAAACTGACCAACATGCGTGCTTCCGGTACTGACGAAGCCGTTGTTCTGGTTCCGCCTATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATT‑AATTTCG‑TTTTTTAG‑TCAT‑AAAAAACCTGCCAGCGATGGCA‑GTTTTTTTGCCTGTCGTG                                                                                                                                                                                                                                                                    <  1:1535496/266‑1                                    CCAACATGCGTGCTTCCGGTACTGACGAAGCCGTTGTTCTGGTTCCGCCTATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGT‑AAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATT‑AATTTCG‑TTTTTTAG‑TCAT‑AAAAAACCTGCCAGCGATGGCA‑GTTTTTTTGCCTGTCGTGAGCGCACACCAATGCG                                                                                                                                                                                                                                                    <  1:1535499/267‑1                                                     GGTACTGACGAAGCCGTTGTTCTGGTTCCGCCTATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGT‑AAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATT‑AATTTCG‑TTTTTTAG‑TCAT‑AAAAAACCTGCCAGCGATGGCA‑G‑‑TTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATA                                                                                                                                                                                                                 <  1:1535500/283‑1                                                                               TCCGCCTATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATT‑AATTTCG‑TTTTTTAG‑TCAT‑AAAAAACCTGCCAGCGATGGCA‑GT‑TTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATT                                                                                                                                                                                               <  1:1535501/277‑1                                                                                     TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGT‑AAACGTCACCTGACGG‑AAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATT‑AATTTCG‑TTTTTTAG‑TCAT‑AAAAAACCTGCCAGCGATGGCAGG‑‑TTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑A                                                                                                                                                                                       <  1:1535502/276‑1                                                                                          GCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACG‑ACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAAACGTCACCTGACGGAAAACGATCG‑CGCCGCGCCAACCGCGCACCGAAAGACGATT‑AATTTCG‑TTTTTTAG‑TCATAAAAAAACCTGCCAGCGATGGCAGG‑‑TTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATACGCCGTTA                                                                                                                                                                       <  1:1535503/288‑1                                                                                                                            TGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTACG‑AAACGTCACCTG‑CGGAAAACGA‑CGTCGCCGCGCCAACCGCGCACCGAAAGACGATT‑AATTTCG‑TTTTTTAG‑TCATAAAAAAACCTGCCAGCGATGGCA‑GT‑TTTTTGCCTGTCGTGAGCGCACACCAATGCGAG                                                                                                                                                                                                                                                  <  1:1535507/179‑1                                                                                                                                              AGTGACTCCGACCTCTATCCGTATTCGT‑AAACGTCACCTGAC‑GAAAACGA‑CGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAATTTCGTTTTTTTAG‑TCATAAAAAAACCTGCCAGCGATGGCA‑G‑‑TTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑‑AAGTCATACGCCGTTAATTGCTTTC‑TTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAAT                                                                                          <  1:1535509/311‑1                                                                                                                                                                                       gCGGAAAACGA‑CGTCGCCGCGCCAACCGCGCACCGAAAGACGATT‑AATTTCG‑TTTTTTAG‑TCATAAAAAAACCTGCCAGCGATGGCA‑G‑‑TTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATACGCCGTTAATTGCTTTC‑TTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAAC                                                                                                       <  1:1535511/257‑1                                                                                                                                                                                                  TCGTCGCCGCGCCAACCGCGCACCGAAAGACGATT‑AATTTCG‑TTTTTTAG‑TCAT‑AAAAAACCTGCCAGCGATGGCA‑G‑‑TTTTTGCCTGTCGTGAGCGCACA‑CAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAAGTCATACGCCGTTAATTGCTTTC‑TTTTTTGGCGTAAGCGTA                                                                                                                                           <  1:1535513/211‑1                                                                                                                                                                                                                                CGATT‑AATTTCG‑TTTTTTAGTTCAT‑AAAAAACCTGCCAGCGATGGCA‑GT‑TTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATACGCCGTTAATTGCTTTC‑TTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAA                                                                    <  1:1535519/254‑1                                                                                                                                                                                                                                               TTTTTAG‑TCAT‑AAAAAACCTGCCAGCGATGGCA‑G‑‑TTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAAGTCATACGCCGTTAATTGCTTTCTTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAA  <  1:1535522/307‑1                                                                                                                                                                                                                                               TTTTTAG‑TCAT‑AAAAAACCTGCCAGCGATGGCA‑G‑‑TTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATACGCCGTTAATTGCTTTC‑TTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGT‑GTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAA  <  1:1535520/304‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CCTGACTGTAAACTGCCTGACCGGTAAGAAACTGACCAACATGCGTGCTTCCGGTACTGACGAAGCCGTTGTTCTGGTTCCGCCTATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGT‑AAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATT‑AATTTCG‑TTTTTTAG‑TCAT‑AAAAAACCTGCCAGCGATGGCA‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4060002‑4060270 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATACGCCGTTAATTGCTTTC‑TTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAA  >  NC_000913/4060276‑4060546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.