New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4060270	15 (0.240)	14 (0.230)	13/388	2.8	45.9%	intergenic (+40/‑177)	bipA/yihL	ribosome‑dependent GTPase, ribosome assembly factor/putative transcriptional regulator YihL
	?	NC_000913	4060276 =	18 (0.290)					intergenic (+46/‑171)	bipA/yihL	ribosome‑dependent GTPase, ribosome assembly factor/putative transcriptional regulator YihL

GACCGGTAAG‑AAACTGACCAACATGCGTGCTTCCGGTACTGACGAAGCCGTTGTTCT‑GGTTCCGCCTATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTA‑TTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCG‑AAAGACGA‑TTAA‑TTTCG‑‑TTTTTTAGTCAT‑AAAAAACCTGCC‑AGCGA‑TGGCAGG‑‑TTTTTTTTTGCC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATACGCCGTTAATTGCTTTC‑TTTTTTGGCG‑TAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAG‑AAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAA  >  NC_000913/4060020‑4060546                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                     cctgactgtaaactgcctgaccggtaagaaactgaccaacatgcgtgcttccggtactgacgaagccgttgttctggttccgcctatccgcatgactctggaacaagctctggagttcatcgatgatgacgaactggtagaagtgactccgacctctatccgtattcgtaaacgtcacctgacggaaaacgatcgtcgccgcgccaaccgcgcaccgaaagacgattaatttcgttttttagtcataaaaaacctgccagcgatggcagTTTTTGCC‑TGTCGTGAGCGCACAcc                                                                                                                                                                                                                                                             <  1:1535493‑M2/25‑1 (MQ=255)   acGGTAAGAAAACTGACCAACATGCGTGCTTCCGGTACTGACGAAGCCGTTGTTCTGGGTTCCGCCTATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTTCGTAAACGTCACCTGACGGAAAACGATCG‑CGCCGCGCCAACCGCGCACCGAAAAGACGATTTAATTTTCGT‑TTTTTTAGTCATAAAAAAACCTGCC‑AGCGA‑TGGCA‑T‑‑TTGCTTTTTGCC‑TGTCGTGAGCGCACACCAATGCg                                                                                                                                                                                                                                                       <  1:1535497/290‑1 (MQ=255)                   cggtaagaaactgaccaacatgcgtgcttccggtactgacgaagccgttgttctggttccgcctatccgcatgactctggaacaagctctggagttcatcgatgatgacgaactggtagaagtgactccgacctctatccgtattcgtaaaacgtcacctgacggaaaacgatcgtcgccgcgccaaccgcgcaccgaaagacgattaatttcgttttttagtcataaaaaacctgccagcgatggcagttTTTTTGCC‑TGTCGTg                                                                                                                                                                                                                                                                       <  1:1535496‑M2/15‑1 (MQ=255)                         tGCGTGCTTCCGGTACTGACGAAGCCGTTGTTCT‑GGTTCCGCCTATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTA‑TTCGTAAACGTCACCTGACG‑‑AAACGATCGTCGCCGCGCCAACCGCGCACCG‑AAAGACGA‑TTAA‑TTTCG‑‑‑TTTTTAGTCAT‑AAAAAAACTGCCGAGCCG‑TGGCAGG‑‑TTTTTTTTTGCC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTC‑ATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATACGCCGTTAATTGcttct                                                                                                                                                                >  1:619041/1‑344 (MQ=255)                                  ccaacatgcgtgcttccggtactgacgaagccgttgttctggttccgcctatccgcatgactctggaacaagctctggagttcatcgatgatgacgaactggtagaagtgactccgacctctatccgtattcgtaaacgtcacctgacggaaaacgatcgtcgccgcgccaaccgcgcaccgaaagacgattaatttcgttttttagtcataaaaaacctgccagcgatggcagttTTTTTGCC‑TGTCGTGAGCGCACACCAATGCg                                                                                                                                                                                                                                                       <  1:1535499‑M2/31‑1 (MQ=255)                                                     ggtactgacgaagccgttgttctggttccgcctatccgcatgactctggaacaagctctggagttcatcgatgatgacgaactggtagaagtgactccgacctctatccgtattcgtaaacgtcacctgacggaaaacgatcgtcgccgcgccaaccgcgcaccgaaagacgattaatttcgttttttagtcataaaaaacctgccagcgatggcagTTTTTGCC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTCAATa                                                                                                                                                                                                                   <  1:1535500‑M2/66‑1 (MQ=255)                                                                             tccgcctatccgcatgactctggaacaagctctggagttcatcgatgatgacgaactggtagaagtgactccgacctctatccgtattcgtaaaacgtcacctgacggaaaacgatcgtcgccgcgccaaccgcgcaccgaaagacgattaatttcgttttttagtcataaaaaacctgccagcgatggcagtTTTTTGCC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAAtt                                                                                                                                                                                                 <  1:1535501‑M2/84‑1 (MQ=255)                                                                                     tatccgcatgactctggaacaagctctggagttcatcgatgatgacgaactggtagaagtgactccgacctctatccgtattcgtaaacgtcacctgacggaaacgatcgtcgccgcgccaaccgcgcaccgaaagacgattaatttcgttttttagtcataaaaaacctgccagcgatggcaggTTTTTGCC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑a                                                                                                                                                                                         <  1:1535502‑M2/91‑1 (MQ=255)                                                                                         gcatgactctggaacaagctctggagttcatcgatgatgacgactggtagaagtgactccgacctctatccgtattcgtaaaacgtcacctgacggaaaacgatcgcgccgcgccaaccgcgcaccgaaagacgattaatttcgttttttagtcataaaaaaacctgccagcgatggcaggTTTTTGCC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATACGCCGTTa                                                                                                                                                                         <  1:1535503‑M2/107‑1 (MQ=255)                                                                                                               tgaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTA‑TTCGTAAACGTCACCTGACGGAAAACGATCG‑CGCCGCGCCAACCGCGCACCG‑AAAGACGATTTAA‑TTTCG‑‑TTTTTTAGTCAT‑AAAAAACCTGCC‑AGCGA‑TGGCAGT‑‑TTCTTTTTTGCC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATACGCCGTTAATTGCTTTC‑TTTTTTGGCG‑TAAGCGTAAGATGc                                                                                                                                      <  1:1535508/288‑1 (MQ=255)                                                                                                                            tgatgacgaactggtagaagtgactccgacctctatccgtattacgaaacgtcacctgcggaaaacgacgtcgccgcgccaaccgcgcaccgaaagacgattaatttcgttttttagtcataaaaaaacctgccagcgatggcagtTTTTTGCC‑TGTCGTGAGCGCACACCAATGCGAg                                                                                                                                                                                                                                                     <  1:1535507‑M2/33‑1 (MQ=255)                                                                                                                                             agtgactccgacctctatccgtattcgtaaacgtcacctgacgaaaacgacgtcgccgcgccaaccgcgcaccgaaagacgattaaatttcgtttttttagtcataaaaaaacctgccagcgatggcagTTTTTGCC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑‑AAGTCATACGCCGTTAATTGCTTTC‑TTTTTTGGCG‑TAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGaat                                                                                           <  1:1535509‑M2/182‑1 (MQ=255)                                                                                                                                                                 cACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCG‑AAAGACGA‑TTAA‑TTTCGTTTTTTTTAGTCAT‑AAAAA‑‑CTGCC‑AGCGA‑TGGCAGGT‑TTTTTTTTTGCC‑TGt                                                                                                                                                                                                                                                                           >  1:1535514/1‑111 (MQ=255)                                                                                                                                                                      gACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAAGACGA‑TTAATTTTCGT‑TTTTTTAGTCAT‑AAAAAAACTGCC‑AGCGACTGGCAGG‑‑ttttttt                                                                                                                                                                                                                                                                                    >  1:1535517/1‑101 (MQ=255)                                                                                                                                                                      gACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCG‑AAAGACGA‑TTAA‑TTTCG‑‑TTTTTTAGTCAT‑AAAAAACCTGCC‑AGCGA‑TGGCAGG‑‑TTTTTTTTTGCC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATACGCCGTTAATTGCTTTC‑TTTTTTGGCGTTAAGCGTAAGATGCTTCATCTgg                                                                                                                             >  1:1535516/1‑244 (MQ=255)                                                                                                                                                                      gACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCG‑AAAGACGA‑TTAA‑TTTCG‑‑‑TTTTTAGTCAT‑AAAAAA‑CTGCC‑AGCGA‑TGGCAGG‑‑TTTTTTTTTGCCTTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATc                                                                                                                                                                                              >  1:1535515/1‑180 (MQ=255)                                                                                                                                                                           aaaaCGATCGTCGCCGCGCCAACCGCGCACCG‑AAAGACGA‑TTAA‑TTTCG‑‑TTTTTTAGTCAT‑AAAAA‑‑CTGCC‑AGCGA‑TGGCAGG‑‑TTTTTTTTTGCC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATACGCCGTTAATTGCTTTC‑TTTTTTGGCG‑TAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATg                                                                        >  1:1535518/1‑289 (MQ=255)                                                                                                                                                                                      gcggaaaacgacgtcgccgcgccaaccgcgcaccgaaagacgattaatttcgttttttagtcataaaaaaacctgccagcgatggcagTTTTTGCC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATACGCCGTTAATTGCTTTC‑TTTTTTGGCG‑TAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAAc                                                                                                        <  1:1535511‑M2/170‑1 (MQ=255)                                                                                                                                                                                                 tcgtcgccgcgccaaccgcgcaccgaaagacgattaatttcgttttttagtcataaaaaacctgccagcgatggcagTTTTTGCC‑TGTCGTGAGCGCACA‑CAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAAGTCATACGCCGTTAATTGCTTTC‑TTTTTTGgcg‑taagcgta                                                                                                                                            <  1:1535513‑M2/134‑1 (MQ=255)                                                                                                                                                                                                                            tCG‑‑TTTTTTAGTCAT‑AAAAA‑‑CTGCC‑AGCGA‑TGGCAGGT‑TTTTTTTTTGCCTTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACg                                                                                                                                                                                                                         >  1:1535524/1‑103 (MQ=255)                                                                                                                                                                                                                            tCG‑‑TTTTTTAGTCAT‑AAAAA‑‑CTGCC‑AGCGA‑TGGCAGG‑‑TTTTTTTTTGCCTTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATa                                                                                                                                                                                 >  1:1535523/1‑141 (MQ=255)                                                                                                                                                                                                                             cgattaatttcgttttttagttcataaaaaacctgccagcgatggcagtTTTTTGCC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATACGCCGTTAATTGCTTTC‑TTTTTTGGCG‑TAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCaa                                                                     <  1:1535519‑M2/205‑1 (MQ=255)                                                                                                                                                                                                                                  tttttAGTCAT‑AAAAAACCTGCC‑AGCGA‑TGGCA‑G‑‑TTATTTTTTGCC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATACGCCGTTAATTGCTTTC‑TTTTTTGGCG‑TAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAG‑AAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGaaa  <  1:1535521/309‑1 (MQ=255)                                                                                                                                                                                                                                            tttttagtcataaaaaacctgccagcgatggcagTTTTTGCC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAAGTCATACGCCGTTAATTGCTTTCTTTTTTTGGCG‑TAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAG‑AAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGaaa  <  1:1535522‑M2/273‑1 (MQ=255)                                                                                                                                                                                                                                            tttttagtcataaaaaacctgccagcgatggcagTTTTTGCC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATACGCCGTTAATTGCTTTC‑TTTTTTGGCG‑TAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAG‑AAACTGGATCGGT‑GTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGaaa  <  1:1535520‑M2/270‑1 (MQ=255)                                                                                                                                                                                                                                               aaaaaaCTGCC‑AGCGA‑TGGCAGGTTTTTTTTTTTGCC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATACGCCGTTAATTGct                                                                                                                                                                   >  1:1535525/1‑142 (MQ=255)                                                                                                                                                                                                                                                     cTGCC‑AGCGA‑TGGCAGG‑‑‑‑TTTTTTTG‑C‑TGTCGTGAGCGCACACCAATGc                                                                                                                                                                                                                                                        <  1:619048/48‑1 (MQ=255)                                                                                                                                                                                                                                                                  ggCAGG‑‑TTCTTTTTTTGC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCtgt                                                                                                                                                                                                                                <  1:619049/63‑1 (MQ=255)                                                                                                                                                                                                                                                                    cAGG‑‑TTTTTTTTTTGC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATACGCCGTTAATTGCTTTC‑TTTTTTGGCG‑TAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAAACTGGATCGGTGGTTGaaa                                          >  1:1535526/1‑240 (MQ=255)                                                                                                                                                                                                                                                                     aggtttttttttttGCC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATACGCCGTTAATTGCTTTC‑TTTTTTGGCG‑TAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCaaagaga                                                                >  1:619053/6‑216 (MQ=255)                                                                                                                                                                                                                                                                           gtttttttG‑C‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCtgt                                                                                                                                                                                                                                <  1:619050/54‑1 (MQ=255)                                                                                                                                                                                                                                                                            tttttttGCC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑aa                                                                                                                                                                                                                                      <  1:619051/49‑1 (MQ=255)                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                     GACCGGTAAG‑AAACTGACCAACATGCGTGCTTCCGGTACTGACGAAGCCGTTGTTCT‑GGTTCCGCCTATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTA‑TTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCG‑AAAGACGA‑TTAA‑TTTCG‑‑TTTTTTAGTCAT‑AAAAAACCTGCC‑AGCGA‑TGGCAGG‑‑TTTTTTTTTGCC‑TGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTAT‑AAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGC‑AAAGTCATACGCCGTTAATTGCTTTC‑TTTTTTGGCG‑TAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAG‑AAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAA  >  NC_000913/4060020‑4060546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.