New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1434336	26 (0.420)	13 (0.210)	13/388	2.8	30.9%	coding (71/114 nt)	ynaM	Rac prophage; protein YnaM
	?	NC_000913	= 1632955	32 (0.520)					coding (66/114 nt)	ynfT	Qin prophage; protein YnfT

GTAATCAAGCAATGTTCTGGTATTGATAGGTCTTCCCTGTTTTGCTACTTCCACTACAGCAT‑CCCCTAGGATAATTCTTACTTCAGGAAGCTGCGCAGGGAACCACTTTAGGGTGTCTTTTGATTTCATGAAGATATTCC‑TT‑AAAATATTATTGA‑TTTTCA‑TTGCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACT‑‑AAAAATGCTGAATATG‑AT‑AAGGAGCGAAGTGATTATCAGTATGCTGTTCATATAGCCTCGAATTAGTAATGTGTTATATATGATATAGTTGACAA‑TTTTTATCCTGGGTGTTCTT‑AAAGTTCGT‑AGATAAACATTGTCGTTTCAGGTATACAGGAATGCTAACAGGTGGCGGCAAAAATCAGGCGGTTTATGGCGCAAGCTGAAGTGGCAACTGCAAACTATCTTATGCAGAGACTCTACACGGATTGGGTTTAAAA  >  NC_000913/1434096‑1434612                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                                             gTAATCAAGCAATGTTCTGGTATTGATAGGTCTTCCCTGTTTTGCTACTTCCACTACAGCAT‑CCCCTAGGATAATTCTTACTTCAGGAAGCTGCGCAGGGAACCACTTTAGGGTGTCTTTTGATTTCATGAAGATATTCC‑TT‑AAAATATTATTGA‑TTTTCA‑TTGCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑TC‑C‑‑CT‑AA‑TTTTATTagag                                                                                                                                                                                                                                                                                 <  1:937209/253‑1 (MQ=11)                                                  tCCACTACAGCAT‑CCCCTAGGATAATTCTTACTTCAGGAAGCTGCGCAGGGAACCACTTTAGGGTGTCTTTTGATTTCATGAAGATATTCC‑TT‑AAAATATTATTGA‑TTTTCA‑TTGCGATATTGTATGTC‑TGATTCAGGATATGTTTGAC‑TTAT‑ACATCGGTTTTT‑‑GTCTGGGGTTATTGGATATGCCAA‑TC‑C‑‑CT‑AATTTTTATTAGAGCATGACTA‑AAAAATGCTGAATATG‑AT‑AAGGAGCGAAGTGATTATCAGTATGCTGTTCa                                                                                                                                                                                                                    <  1:937216/266‑1 (MQ=11)                                                        aCAGCATCCCCCTAGGATAATTCTTACTTCAGG‑AGCTGCGCAGGGAACCACTTTAGGGTGTCTTTTGATTTCATGAAGATATTCC‑TTAAAAATATTATTGA‑TTTTCA‑TTGCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACTAAAAAAATGCTGAATATG‑ATAAAGGAGCGAAGTGATTATCAGTATGCTGTTCATATAGCCTCGAATTAGTAAt                                                                                                                                                                                                >  1:172016/1‑279 (MQ=11)                                                         cAGCAT‑CCCCTAGGATAATTCTTACTTCAGG‑AGCTGCGCAGGGAACCACTTTAGGGTGTCTTTTGATTTCATGAAGATATTCC‑TTAAAAATATTATTGA‑TTTTCA‑TTGCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACT‑‑aaaaaat                                                                                                                                                                                                                                                                 >  1:172017/1‑209 (MQ=9)                                                                              cTTACTTCAGGAAGCTGCGCAGGGAACCACTTTAGGGTGTCTTTTGATTTCATGAAGATATTCC‑TT‑‑AAATATTATTGA‑TTTTCA‑TTGCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGG‑TATTGGATATGCCAA‑CT‑C‑‑CT‑Atattagggcatgactaaaaatgctgaatatgataaggagagatgtgattatcagtatgctgttcatatagcctcgaattagtaatgtgtatatatgatatagttgacattttatctttgggtgttcttaaagttcgtagataaaca                                                                                                                                            <  1:326680‑M1/309‑147 (MQ=255)                                                                                   ttCAGGAAGCTGCGCAGGGAACCACTTTAGGGTGTCTTTTGATTTCATGAAGATATTCC‑TT‑AAAATATTATTGA‑TTTTCA‑TTGCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACTA‑AAAAATGCTGAATATG‑AT‑AAGGAGCGAAGTGATTATCAGTATGCTGTTCat                                                                                                                                                                                                                   <  1:937219/231‑1 (MQ=18)                                                                                        gatgCTGCGCAGGGAACCACTTTAGGGTGTCTTTTGATTTCATGAAGATATTCC‑TT‑AAAATATTATTGA‑TTTTCA‑TTGCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACT‑‑AAAAATGCTGAATATG‑AT‑AAGGAGCGAAGTGATTATCAGTATGCTGTTCAtata                                                                                                                                                                                                                <  1:937222/225‑1 (MQ=21)                                                                                            cTGCGCAGGGAACCACTTTAGGGTGTCTTTTGATTTCATGAAGATATTCCTTT‑AAAATATTATTGA‑TTTTCA‑TTGCGATATTGTATGTC‑TGATTCAGGATATGTTTGACTTTATAACATCGG‑TTTTTGGTCT‑GGGTTATTGGATATGCCAA‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACTA‑AAAAATGCTGAATATG‑AT‑AAGGAGCGAAGTGATTATCAg                                                                                                                                                                                                                               <  1:937220/216‑1 (MQ=11)                                                                                                       aCCACTTTAGGGTGTC‑TTTGATTT‑ATGAAGATATTCC‑TT‑AAAAATATATTGA‑TTTTCA‑TTGCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑‑TTT‑‑G‑CT‑GGG‑TATTGGATATGCCAA‑CT‑C‑‑CT‑Atattagggcatgactaaaaaaaatgctgaatatgataaggagagatgtgattatcagtatgctgttcatatagcctcgaattagtaaatgtgtatatatgatatagttgacaatttttatctt                                                                                                                                                                   <  1:326688‑M1/258‑124 (MQ=255)                                                                                                                  tgtctttttgatttCATGAAGATATTCC‑TT‑AAAATATTATTGA‑TTTTCA‑TTGCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑CT‑A‑‑CT‑Atattagggcatgactaaaaatgctgaatatgataaggagagatgtgattatcagtatgctgttcatatagcctcgaattagtaatgtgttatatatgatatagttgacaattttatcttgggtgttcttaaagttcgtagata                                                                                                                                               <  1:326682‑M1/267‑144 (MQ=255)                                                                                                                   tgtCTTTTGATTTCATGAAGATATTCC‑TT‑AAAATATTATTGA‑TTTTCA‑TTGCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACT‑‑a                                                                                                                                                                                                                                                                       >  1:937224/1‑148 (MQ=32)                                                                                                                       ttttGATTTCATGAAGATATTCC‑TT‑AAAATATTATTGA‑TTTTCA‑TTGCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACT‑‑AAAAATGCTGAATATG‑AT‑AAGGAGCGAAGTGATTATCAGTATGCTGTTCATATAGCCTCGAATTAGTAATGTGTTATATATGATATAGTTGACAA‑ttt                                                                                                                                                                   >  1:937225/1‑241 (MQ=33)                                                                                                                               tCATGAAGATATTCC‑TT‑AAAATATTATTGA‑TTTTCA‑TTGCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACTA‑AAAAATGCTGAATATG‑AT‑AAGGAGCGAAGTGATTATCAGTATGCTGTTCATATAGCCTCGAATTAGTAATGTGTTATATATGATATAGTTGACAA‑TTTTTATCCTGGGTGTTCTTAAAAGTTCGT‑AGATAAACATTGTCGTTTCAgg                                                                                                                 <  1:937223/283‑1 (MQ=21)                                                                                                                                         attccttaaaaaaTATTATTGA‑TTTTCA‑TTGCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACT‑‑‑AAAATGCTGAATATG‑AT‑AAGGAGCGAAGTGATTATCAGTATGCTGTTCATATAGCCTCGAATTAGTAATGTGTTATATATGATATAGTTGACa                                                                                                                                                                        >  1:172022/10‑220 (MQ=255)                                                                                                                                          ttCC‑TT‑AAAATATTATTGA‑TTTTCA‑TTGCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑CCTA‑‑CT‑Atattagggcatgactaaaaatgct                                                                                                                                                                                                                                                                      <  1:326701‑M1/130‑25 (MQ=255)                                                                                                                                                taaaaataTTATTGATTTTTCATTTGCGATATTG‑ATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑‑TTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑CT‑A‑‑CT‑Atattagggcatgactaaaaatgctgaatatgataaggagagatgtgattatcag                                                                                                                                                                                                                                        <  1:326697‑M1/153‑55 (MQ=255)                                                                                                                                                  aaaaTATTATTGA‑TTTTCA‑TTGCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACT‑‑AAAAATGCTGAATATG‑AT‑AAGGAGCGAAGTGATTATCAGTATGCTGTTCATATAGCCTCGAATTAGTAATGTGTTATATATGATATAGTTGACAATTTTTTATCCTgg                                                                                                                                                          >  1:937230/1‑226 (MQ=25)                                                                                                                                                    aaTATTATTGA‑TTTTCA‑TTGCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACTA‑AAAAATGCTGAATATG‑AT‑AAGGAGCGAAGTGATTATCAGTATGCTGTTCATATAGCCTCGAATTAGTAATGTGTTATATATGat                                                                                                                                                                                  >  1:937231/1‑201 (MQ=21)                                                                                                                                                          attGA‑TTTTCA‑TTGCGATATTGTATGTCTTGATTCAGGATATGTTTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GG‑‑TATTGGATATGCCAA‑CT‑A‑‑CT‑Atattagggcatgactaaaaatgctgaatatgataaggagagatgtgattatcagtatgctgttcatatagcctcgaattagt                                                                                                                                                                                                            <  1:326696‑M1/173‑83 (MQ=255)                                                                                                                                                                    cA‑TTGCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAACTA‑C‑‑CT‑Atattagggcatgactaaaaatgctgaatatgataaggagagatgtgattatcagtatgctgttcatatagcctcgaattagtaaatgtgttatatatgatatagtttgacaaatttttatcttgggtgttcttaaaagttcgtagataaacttgcgtttcaggtatacaggaatgctaacaggtggcagcaaaaatcaggcggttttatggcgcaagctgaagcggcaactgcaaactatcttatgta                                      <  1:326669‑M1/331‑249 (MQ=255)                                                                                                                                                                        tGCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑CT‑C‑‑CT‑Atattagggcatgactaaaaatgctgaatatgataaggagagatgtgattatcagtatgctgttcatatagcctcgaattagtaatgtgttatatatgatatagttgacaatttttatcttgggtgttcttaaaagtttcgtagataaacattgtcgtttcaggtatacaggaatgctaacaggtggcagcaaaaatcaggcggtttatggcgcaagctga                                                                  <  1:326673‑M1/299‑221 (MQ=255)                                                                                                                                                                         gCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑TC‑C‑‑CT‑AATTTTTATTAGAGCATGACT‑‑AAAAATGCTGAATATG‑AT‑AAGGAGCGAAGt                                                                                                                                                                                                                                        <  1:937229/128‑1 (MQ=255)                                                                                                                                                                         gCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑G‑CT‑GGGTTATTGGATATGCCAACTA‑C‑‑CTAAtattagggcatgactaaaaatgctgaatatgataaggagagatgtgattatcagtatgctgttcatatagcctcgaattagtaatgtgttatatatgatatagttgacaaatttttatctttgggtgtttctttaaaagtttcgtagataaacattgtcgtttcaggatacaggaatgctaacaggtggcagcaaaaatcaggcggttttaggcgcaagctgaagcggcaactgcaaactatcttatgtagagactcta                           <  1:326665‑M1/338‑260 (MQ=255)                                                                                                                                                                              atTGTATGTC‑TGATTCAGGATATG‑TTGA‑‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGGTATGCCAA‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACT‑‑AAAAATGCTg                                                                                                                                                                                                                                                              >  1:937233/1‑101 (MQ=255)                                                                                                                                                                                  tATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACT‑‑AAAAATGCTGAATATG‑AT‑AAGGAGCGAAGTGATTATCAGTATGCTGTTCATATAGCCTCGAATTAGTAATGTGTTATATATGATATAGTTg                                                                                                                                                                           >  1:937234/1‑179 (MQ=35)                                                                                                                                                                                                   tatG‑TTGAC‑TTAT‑ACATCGG‑‑TTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑CT‑A‑‑CT‑Atattagggcatgactaaaaatgctgaatatgataaggagagatgtgattatcagtatgctgttcatatagcctcgaattagtaatgtgttatatatgatatagttgacaattttatcttgggtgttcttaagttcgtagataaacattgtcgtttcaggtatacaggaatgctaacaggtggca                                                                                                      <  1:326677‑M1/236‑185 (MQ=255)                                                                                                                                                                                                      g‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACT‑‑‑AAAATGCTGAATATG‑AT‑AAGGAGCGAAGTGATTATCAGTATGCTGTTCATATAGCCTCGAATTAGTAATGTGTTatatat                                                                                                                                                                                     >  1:172024/1‑149 (MQ=37)                                                                                                                                                                                                                at‑aCATCGG‑TTTT‑‑GTCT‑GGG‑TATTGGATATGCCAACTC‑C‑‑TA‑Atattagggcatgactaaaaatgctgaatatgataaggagagatgtgattatcagtatgctgttcatatagcctcgaattagtaatgtgttatatatga                                                                                                                                                                                            <  1:326693‑M1/140‑99 (MQ=255)                                                                                                                                                                                                                   aCATCGGTTTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑CT‑C‑‑CT‑Atattagggcatgactaaaaatgctgaatatgataaggagagatgtgattatcagtatgctgttcatatagcctcgaattagtaaatgtgt                                                                                                                                                                                                    <  1:326694‑M1/131‑91 (MQ=255)                                                                                                                                                                                                                    cATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑TC‑CTACT‑Atattagggcatgactaaaaatgctgaatatgataaggagagatgtgattatcagtatgctgttcatatagcctcgaattagtaatgtgtttatatatgatatagttgacaattttatctttgggtgttcttaaagttcgtagataaacattgcgtttcaggatacaggaatgctaacaggtggcagcaaaaatcaggcggtttaggcgcaagctgaagcggcaactgcaaactatcttatgtagagactctacacggattgggtttaaaagtatacatagat    <  1:326663‑M1/323‑283 (MQ=255)                                                                                                                                                                                                                             tt‑‑GTCT‑GGGTTATTGGATATGCCAA‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACTA‑AAAAATGCTGAATATG‑AT‑AAGGAGCGAAGTGATTATCAGTATGCTGTTCATATAGCCTCGAATTAGTAATGTGTTATATATGATATAGTTGACAA‑TTTTTATCCTGGGTGTTCTTAAAAGTTCGT‑AGATAAACATTGTc                                                                                                                         >  1:172025/1‑190 (MQ=255)                                                                                                                                                                                                                                              ggATATGCCAA‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACT‑‑‑AAAATGCTGAATATG‑AT‑AA‑GAGCGAAGTGATTATCAGTATGCTGTTCATATAGCCTCGAATTAGTAATGTGTTATATAT‑ATATAGTTGACAA‑TTTTTATCCTGGGTGTTCTT‑aa                                                                                                                                               >  1:937241/1‑150 (MQ=14)                                                                                                                                                                                                                                                     ccAA‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACT‑‑AAAAATGCTGAATATG‑AT‑AAGGAGCGAAGTGATTATCAGTATGCTGTTCATATAGCCTCGAATTAGTAATGTGTTATATATGATATAGTTGACAA‑TTTTTATCCTGGGTGTTCTT‑AAAGTTCGT‑AGATAAACATTG‑CGTTTCAGGTATACAGGAATGCTAACAGGTGGCGGCAAAAATCAGGCGGTTTATGGCGCAAGCTGAAGTGGCAACTGCAAACTATCTTATGCAGAGACTCTACACg                <  1:937244/271‑1 (MQ=38)                                                                                                                                                                                                                                                      cAA‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACT‑‑AAAAATGCTGAATATG‑AT‑AAGGAGCGAAGTGATTATCAGTATGCTGTTCATATAGCCTCGAATTAGTAATGTGTTATATATGATATAGTTGACAA‑TTTTTATCCTGGGTGTTCTT‑AAAGTTCGT‑AGATAAACATTG‑CGTTTCAGGTATACAGGAATGCTAACAGGTGGCGGCAAAAATCAGGCGGTTTATGGCGCAAGCTGAAGTGGCAACTGCAAACTATCTTATGCAGAGACTCTACACg                <  1:937243/270‑1 (MQ=39)                                                                                                                                                                                                                                                       aa‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACT‑‑AAAAATGCTGAATATG‑AT‑AAGGAGCGAAGTGATTATCAGTATGCTGTTCATATAGCCTCGAATTAGTAATGTGTTATATATGATATAGTTGACAA‑TTTTTATCCTGGGTGTTCTT‑‑AAGTTCGT‑AGATAAACATTG‑CGTTTCAGGTATACAGGAATGCTAACAGGTGGCGGCAAAAATCAGGCGGTTTATGGCGCAAGCTGAAGTGGCAACTGCAAACTATCt                                   <  1:937237/249‑1 (MQ=255)                                                                                                                                                                                                                                                           c‑c‑‑cT‑AA‑TTTTATTAGAGCATGACTAAAAAAATGCTGAATATG‑AT‑AAGGAGCGAAGTGATTATCAGTATGCTGTTCATATAGcc                                                                                                                                                                                                             >  1:172027/1‑83 (MQ=14)                                                                                                                                                                                                                                                           c‑c‑‑cT‑AA‑TTTTATTAGAGCATGACT‑‑AAAAATGCTGAATATGAAT‑AAGGAGCGAAGTGATTATCAGTATGCTGTTCATATAGCCTCGAATTAGTAATGTGTTATATATGATATAGTTGACAA‑TTTTTATCCTGGGTGTTCTT‑AAAGTTCGTAAGATAAACATTGTCGTTTCAGGTATACAGGAATGCTAACAGGTGGCGGCAAAAATCAGGCGGTTTATGGCGCAAGCTGAAGTGGCAACTGCAAACTATCTTATGCAGAGACTCTACACGGATTGGGTTTaaaa  >  1:937246/1‑283 (MQ=255)                                                                                                                                                                                                                                                                cT‑AA‑TTTTATTAGAGCATGACT‑‑AAAAATGCTGAATATG‑AT‑AAGGAGCGAAGTGATTATCAGTATGCTGTTCATATAGCCTCGAATTAGTAATGTGTTATATATGATATAGTTGACAA‑TTTTTATCCTGGGTGTTCTT‑AAAGTTCGT‑AGATAAACATTG‑CGTTTCAGGTATACAGGAATGCTAACAGGTGGCGGCAAAAATCAGGCGGTTTATGGCGCAAGCTGAAGTGGCAACTGCAAACTATCTTATGCAGAGACTCTACACGGATTGGGTTTa     <  1:937239/275‑1 (MQ=38)                                                                                                                                                                                                                                                                 t‑AA‑TTTTATTAGAGCATGACT‑‑AAAAATGCTGAATATG‑AT‑AAGGAGCGAAGTGATTATCAGTATGCTGTTCATATAGCCTCGAATTAGTAATGTGTTatatat                                                                                                                                                                                     >  1:937247/1‑102 (MQ=40)                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                                             GTAATCAAGCAATGTTCTGGTATTGATAGGTCTTCCCTGTTTTGCTACTTCCACTACAGCAT‑CCCCTAGGATAATTCTTACTTCAGGAAGCTGCGCAGGGAACCACTTTAGGGTGTCTTTTGATTTCATGAAGATATTCC‑TT‑AAAATATTATTGA‑TTTTCA‑TTGCGATATTGTATGTC‑TGATTCAGGATATG‑TTGAC‑TTAT‑ACATCGG‑TTTT‑‑GTCT‑GGGTTATTGGATATGCCAA‑TC‑C‑‑CT‑AA‑TTTTATTAGAGCATGACT‑‑AAAAATGCTGAATATG‑AT‑AAGGAGCGAAGTGATTATCAGTATGCTGTTCATATAGCCTCGAATTAGTAATGTGTTATATATGATATAGTTGACAA‑TTTTTATCCTGGGTGTTCTT‑AAAGTTCGT‑AGATAAACATTGTCGTTTCAGGTATACAGGAATGCTAACAGGTGGCGGCAAAAATCAGGCGGTTTATGGCGCAAGCTGAAGTGGCAACTGCAAACTATCTTATGCAGAGACTCTACACGGATTGGGTTTAAAA  >  NC_000913/1434096‑1434612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.