New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1434336	26 (0.420)	13 (0.210)	13/388	2.8	30.9%	coding (71/114 nt)	ynaM	Rac prophage; protein YnaM
	?	NC_000913	= 1632955	32 (0.520)					coding (66/114 nt)	ynfT	Qin prophage; protein YnfT

CAAAGGCATATAGGCTATATCACCTTGATA‑TTTTTC‑‑TTTTTCAGAT‑‑AAAAACTGTTATCTATGTATACTTTT‑‑AAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAA‑CCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTAT‑ACCTG‑AAACGACAATGTTTATCTACGAA‑CTTT‑‑AAGAA‑CACCCAA‑GAT‑AAAAATT‑G‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTAGGGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTC‑AACATATCCTGAATCAGACATACAATATCGCAATG‑AAAATCAATAATA‑TTTT‑AAGG‑AATATCTTCATG‑AAATCAAAAGACACCCTAAAGTGGTTCCCTGCGCAGCTTCCTGAAGTAAGAATTATCCTAGGGGATGCTGTAGTGGAAGTAGCAAAACAGGGAAGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACA  >  NC_000913/1632616‑1633240                                                                                                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                           aaaaGGCATATAGGCTATATCACCTTGATATTTTTTCTTTTTTTCAGATAAAAAAACTGTTATCTATGTATACTTTTTAAAACCCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCCCCATAAA‑CCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTAT‑‑CCTG‑AAACGACAATGTTTATCTACGAA‑CTTT‑‑AAGAA‑CACCCAA‑GATAAAAAATT‑G‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAT‑A‑GTA‑GGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑‑AAACCGATGt                                                                                                                                                                                                                                                         >  1:326657/2‑390 (MQ=11)                                                              aTCTATGTATACTTTT‑‑AAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCC‑TAAA‑CCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTAT‑‑CCTG‑AAACG‑CAATGTTTATCTACGAA‑CTTT‑‑AAGAA‑CACCCAAAGAT‑AAAA‑TT‑G‑TCAA‑CTATATCATATAT‑AAACACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑Atagtaggattggcatatccaataacccagacaaaaccgatg                                                                                                                                                                                                                                                                   <  1:326663‑M2/323‑42 (MQ=255)                                                                     tataCTTTT‑‑AAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAA‑CCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTAT‑ACCTG‑AAACG‑CAATGTTTATCTACGAA‑C‑TT‑‑AAGAA‑CACCCAA‑GAT‑AAAAATT‑GATCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTAGGGa                                                                                                                                                                                                                                                                                                >  1:1145732/1‑286 (MQ=255)                                                                      ataCTTTT‑‑AAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAA‑CCGCCTGA‑TTTTGCTGCCACCTGTTAGCATTCCTGTAT‑ACCTG‑AAACG‑CAATGTTTATCTACGAA‑CTTT‑‑AAGAA‑CA‑CCAA‑GAT‑AAAAATT‑G‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTAgg                                                                                                                                                                                                                                                                                                  >  1:1145733/1‑281 (MQ=255)                                                                                               tAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCTAAAA‑CCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTAT‑‑CCTG‑AAACGACAATGTTTATCTACGAAACTTTTAAAGAAACACCCAAAGAT‑AAAAATTTG‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑Attaggtagttggcatatccaataacccagcaaaaccgatgtataagtcaacatatcctgaatcagacatacaatatcgc                                                                                                                                                                                                                             <  1:326665‑M2/338‑80 (MQ=255)                                                                                                 gagTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAA‑CCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTAT‑ACCTG‑AAACGACAATGTTTATCTACGAA‑CTTT‑‑AAGAA‑CACCCAA‑GAT‑AAAAATT‑G‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑aaa                                                                                                                                                                                                                                                                                                          >  1:1145736/1‑254 (MQ=39)                                                                                                 gagTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAA‑CCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTAT‑ACCTG‑AAACGACAATGTTTATCTACGAA‑CTTT‑‑AAGAA‑CACCCAA‑GAT‑‑AAAATT‑G‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAT‑A‑GTAGG‑‑‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTC‑AACATATCCTGAATCAGACATACAATATCGCAATG‑AAAATCAATAATA‑TTTT‑AAg                                                                                                                                                                                       >  1:326667/1‑355 (MQ=255)                                                                                                        tACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTAT‑ACCTG‑AAACG‑CAA‑GTTTATCTACGAA‑CTTTT‑AAGAA‑CACCCAA‑GAT‑AAAAATTTG‑TCAAACTATATCATATAT‑AA‑CACATTTACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑Ataggtagttggcatatccaataacccagacaaaaccgatgtataagtcaacatatcctgaatcagacatacaatatcgcaatg                                                                                                                                                                                                                         <  1:326669‑M2/331‑84 (MQ=255)                                                                                                        tACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCAT‑AA‑CCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTAT‑ACCTG‑AAACG‑CAATGTTTATCTACGAA‑CTTT‑‑AAGAA‑CACCCAA‑GAT‑AAAAATT‑G‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATG‑CCTAAT‑‑AA‑A‑TTAGGGA‑TTGGCATAT‑CCAAT‑aa                                                                                                                                                                                                                                                                             >  1:1145737/1‑267 (MQ=255)                                                                                                                    tttGCAGTTGCCGCTTCAGCTTGCGCCATAAA‑CCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTAT‑ACCTGAAAACGACAATGTTTATCTACGAA‑CTTT‑‑AAGAA‑CACCCAA‑GAT‑AAAAATT‑G‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTAGGGA‑TTgg                                                                                                                                                                                                                                                                                           <  1:1145735/248‑1 (MQ=38)                                                                                                                          gTTGCCGCTTCAGCTTGCGCCATAAA‑CCGCCTGA‑TTTTGCTGCCACCTGTTAGCATTCCTGTAT‑ACCTGAAAACGACAATGTTTATCTACGAA‑CTTTTAAAGAA‑CACCCAA‑GAT‑AAAAATT‑G‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCATT‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTAGGGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTC‑AACATATCCTGAATCAGACATACAATATCGCAATG‑AAAATCAATAATATTTTT‑AAGG‑AATATCTTCATG‑AAATCaa                                                                                                                                                                 <  1:326668/358‑1 (MQ=11)                                                                                                                                   tCAGCTTGCGCCATAAA‑CCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTAT‑ACCTG‑AAACGACAATGTTTATCTACGAAACTTTT‑AAGAA‑CACCCAA‑GAT‑AAAAATT‑G‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑Ataggagttggcatatccaataacccagacaaaaccgatgtataagtcaacatatcctgaatcagacatacaatatcgca                                                                                                                                                                                                                             <  1:326673‑M2/299‑80 (MQ=255)                                                                                                                                           cgcCATAAA‑CCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTAT‑ACCTG‑AAACG‑CAATGTTTATCTACGAA‑CTTT‑‑AAGAA‑CACCCAA‑GAT‑AAAAATT‑G‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAATAAAA‑A‑TTAGGGA‑TTGGCATAT‑CCAAT‑AA‑cc                                                                                                                                                                                                                                                                          >  1:1145741/1‑238 (MQ=255)                                                                                                                                                                ttGCTGCCACCTGTTAGCATTCCTGTATAACCTG‑AAACGACAATGTTTATCTACGAA‑CTTA‑‑AAGAA‑CACCCAA‑GAT‑AAAAATTAG‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTA‑GGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTC‑AACATATCCTGAATCAGACATACAATATCGc                                                                                                                                                                                                                  >  1:1145743/1‑273 (MQ=255)                                                                                                                                                                   ctgcCACCTGTTAGCATTCCTGTAT‑ACCTGAAAACGACAATGTTTATCTACGAA‑CTTT‑‑AAGAA‑CACCCAA‑GAT‑AAAAATT‑G‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTA‑GGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTC‑AACATATCCTGa                                                                                                                                                                                                                                     <  1:1145738/250‑1 (MQ=255)                                                                                                                                                                   ctgcCACCTGTTAGCATTCCTGTAT‑ACCTG‑AAACGACAATGTTTATCTACGAA‑CTTT‑‑AAGAA‑CACCCAA‑GAT‑AAAAATT‑G‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTAGGGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTC‑AACATATCCTGa                                                                                                                                                                                                                                     <  1:1145739/250‑1 (MQ=35)                                                                                                                                                                    tgcCACCTGTTAGCATTCCTGTAT‑ACCTG‑AAACGACAATGTTTATCTACGAA‑CTT‑‑‑AAGAA‑CACCCAA‑GAT‑AAAA‑TT‑G‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑Atagtagttggcatatccaataacccagacaaaccgatgtataagtcaacata                                                                                                                                                                                                                                                        <  1:326677‑M2/236‑53 (MQ=255)                                                                                                                                                                               aGCATTCCTGTAT‑ACCTG‑AAACGACAATGTTTATCTACGAA‑CTTT‑‑AAGAA‑CACCCAA‑GAT‑AAAAATT‑G‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCAT‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑‑TAGGGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTC‑AACATATCCTGAATCAGACATACAATATCGCAATG‑AAAATCAATAATA‑tt                                                                                                                                                                                             >  1:1145745/1‑276 (MQ=21)                                                                                                                                                                                                   aaaCGACAATGTTTATCTACGAA‑CTTT‑‑AAGAA‑CACCCAA‑GAT‑AAAAATT‑G‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑ATTTAGGGA‑TTGGC‑TATACCAAT‑AA‑c                                                                                                                                                                                                                                                                           >  1:1145747/1‑185 (MQ=255)                                                                                                                                                                                                            tGTTTATCTACGAA‑CTTT‑‑AAGAA‑CACCCAAAGAT‑AAAA‑‑T‑G‑TCAA‑CTATATCATATAT‑A‑‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑Ataggagttggcatatccaatacccagacaaaaccgatgtataagtcaacatatcctgaatcagacatacaatatcgcaatgaaaatcaataatatttaaggaatatcttcatgaaatcaaaagacaccctaaagtggttccctgcgcagcttcctgaagtaag                                                                                                                                         <  1:326680‑M2/309‑164 (MQ=255)                                                                                                                                                                                                             gTTTATCTACGAA‑CTTT‑‑AAGAA‑CACCCAA‑GAT‑AAAAATT‑G‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTAGGGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTC‑AACATATCCTGAATCAGACATACAATATCGCAATG‑AAAATCAATAATA‑TTTTAAAGG‑AATATCt                                                                                                                                                                              >  1:1145749/1‑262 (MQ=21)                                                                                                                                                                                                                tATCTACGAA‑CTTT‑‑AAGAA‑CACCCAA‑GAT‑AAAA‑TT‑G‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑Atagtagttggcatatccaataacccagacaaaaccgatgtataagtcaacatatcctgaatcagacatacaatatcgcaatgaaaatcaataatattttaaggaatatcttcatgaaatcaaaaagaca                                                                                                                                                                           <  1:326682‑M2/272‑130 (MQ=255)                                                                                                                                                                                                                                            aa‑GAT‑AAAAATT‑G‑TCAA‑CTATATCATATAT‑A‑‑CACATTTACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTTTTTAGTCATGCCCTAAT‑Ataggagttggcatatccaatacccagcaaaccgatgtataagtcaacatatcctgaatcagacatacaatatcgcaatgaaaatcaatatatttttaaggaatatcttcataaatcaaagacaccctaaagtggt                                                                                                                                                                     <  1:326688‑M2/258‑136 (MQ=255)                                                                                                                                                                                                                                                    aaaaTT‑G‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCCTTTATCATA‑TTCAGCAT‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTAGGGA‑TTGGCATAT‑CCaa                                                                                                                                                                                                                                                                                 <  1:326683/139‑1 (MQ=255)                                                                                                                                                                                                                                                                    atatCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATATTTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTAGGGA‑TTGGCATATCCCAATAAA‑CCCAGAC‑AAAACCGATGTATAAGTC‑AACATATCCTGAATCAGACATACAATATCGCAATG‑AAAATCAATAATA‑TTTT‑AAGG‑AATATCTTCATG‑AAATCAAAAGACACCCTAAAGTGGTTCCCTGCGCAGCTTCCTGAAGTAAGAATTATCCTAg                                                                                                           <  1:1145752/284‑1 (MQ=16)                                                                                                                                                                                                                                                                       tCATATATAAA‑CACATT‑ACTAATTTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCAT‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTA‑‑‑AAT‑A‑‑TAGGTAGTTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTAT‑AGAC‑AACATAT‑CTGAATCAGACATACAATATCGCAATGAAAAATCAAATATATTTTT‑AAGGAAATATC‑TCATGAAAATCaaaaa                                                                                                                                                              >  1:326692/1‑228 (MQ=2)                                                                                                                                                                                                                                                                       tCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCCTTTATCATA‑TTCAGCAT‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTAGGGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTC‑AACATATCCTGAATCAGACATACAATATCGCAATG‑AAAATCAATAATA‑TTTT‑AAGG‑AATATCTTCATG‑AAATCAAAAGACACCCTAAAGTGGTTCCCTGCGCAG‑‑TCCTGAAGTAAGAAt                                                                                                                   <  1:326687/270‑1 (MQ=255)                                                                                                                                                                                                                                                                       tCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑Attaggagttggcatatccaatacccagacaaaaccgatgtat                                                                                                                                                                                                                                                                  <  1:326693‑M2/140‑43 (MQ=255)                                                                                                                                                                                                                                                                                aa‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTAGGGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTC‑AACATATCCTGAATCAGa                                                                                                                                                                                                                               <  1:1145754/159‑1 (MQ=35)                                                                                                                                                                                                                                                                                 a‑cacATTTACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑Ataggagttggcatatccaataacccagacaaaaaccgatgt                                                                                                                                                                                                                                                                   <  1:326694‑M2/131‑42 (MQ=255)                                                                                                                                                                                                                                                                                    acaTT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCATTTTTTTTTTTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTAGGGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTC‑AACATATCCTGAATCAGACATACAat                                                                                                                                                                                                                       <  1:326690/173‑1 (MQ=11)                                                                                                                                                                                                                                                                                          aCTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑Atagtagttggcatatccaataccagacaaaaccgatgtataagtcaaacatatcctgaatcaagacatacaatatcgcaatgaaaatcaat                                                                                                                                                                                                                 <  1:326696‑M2/173‑92 (MQ=255)                                                                                                                                                                                                                                                                                                 tCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTAGGGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTC‑AACATATCCTGAATCAGa                                                                                                                                                                                                                               <  1:1145755/145‑1 (MQ=37)                                                                                                                                                                                                                                                                                                   gAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑‑‑TTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTAGGGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTCAAACATATCCTGAATCAGACATACAATATCGCAATG‑AAAATCAATAATATTTTT‑AAGG‑AATATCTTCAt                                                                                                                                                                          <  1:326691/192‑1 (MQ=11)                                                                                                                                                                                                                                                                                                               aCAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTAGGGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTc                                                                                                                                                                                                                                                  <  1:1145756/113‑1 (MQ=39)                                                                                                                                                                                                                                                                                                                       cTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑Atagtagttggcatatccaataacccagacaaaccgatgtataagtcaacatatcctgaatcagacatcaatatcgcaaatgaaaaatcaataatattttta                                                                                                                                                                                                       <  1:326697‑M2/155‑102 (MQ=255)                                                                                                                                                                                                                                                                                                                         gATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTAGGGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTC‑AACATATCCTGAATCAGACATACAATATCGCAATG‑AAAATCAATAATA‑TTTT‑AAGG‑AATATCTTCATg                                                                                                                                                                         >  1:1145759/1‑171 (MQ=35)                                                                                                                                                                                                                                                                                                                           tAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTAGGGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTC‑AACATATCCTGAATCAGACATACAATATCGCAATG‑AAAATCAATAATA‑TTTT‑AAGG‑AATATCTTCATG‑AAATCAAAAGACACCCTAAAGTGGTTCCCTGCGCAGCTTCCTGAAGTAAGAATTATCCt                                                                                                             <  1:1145757/228‑1 (MQ=34)                                                                                                                                                                                                                                                                                                                                                    ttCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTAGGGA‑TTGGCATAT‑CCAAT‑AACCCCAGACAAAAACCGATGTATAAGTC‑AACATATCCTGAATCAGACATACAATATCGCAATG‑AAAATCAATAATA‑TTTT‑AAGG‑AATATCTTCATG‑AAATCAAAAGACACCCTAAAGTGGTTCCCTGCGCAGCTTCCTGAAGTAAGAATTATCCTAGGGGATGCTGTAGTGGAAGTAGCAAAACAGGGAAGACCTATCAAt                                                               >  1:1145760/1‑253 (MQ=14)                                                                                                                                                                                                                                                                                                                                                      cAGCA‑‑‑‑‑‑‑‑‑‑TTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑‑TA‑TGA‑GTGTGATAT‑CCAAT‑AA‑CCCAGACAAAAACCGATGTATAAGTC‑AACATATCCTGAATCAGACATACAATATCGCAATG‑AAAATCAATAATA‑TTTT‑AAGG‑AATATCt                                                                                                                                                                              >  1:326700/1‑137 (MQ=11)                                                                                                                                                                                                                                                                                                                                                       aGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑Atagtaggttggcatatccaataacccagacaaaaccgatgtataagtcaacatatcctgaatcagacatacaatatcgcaatgaaaatcaataatattttaaggaa                                                                                                                                                                                                  <  1:326701‑M2/130‑107 (MQ=255)                                                                                                                                                                                                                                                                                                                                                                      ttt‑‑‑AGTCATGCCCTAAT‑AAATA‑GTA‑GGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTC‑AACATATCCTGAATCAGACATACAATATCGCAATG‑AAAATCAATAATA‑TTTT‑AAGG‑AATATc                                                                                                                                                                               >  1:326703/1‑131 (MQ=11)                                                                                                                                                                                                                                                                                                                                                                      ttt‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTAGGGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTC‑AACATATCCTGAATCAGACATACAATATCGCAATG‑AAAATCAATAATA‑TTTT‑AAGG‑AATATCTTCATG‑AAATCAAAAGACACCCTAAAGTGGTTCCCTGCGCAGCTTCCTGAAGTAAGAATTATCCTAGGGGATGCTGTAGTGGAAGTAGCAAAACAGGGAAGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACa  >  1:1145762/1‑303 (MQ=31)                                                                                                                                                                                                                                                                                                                                                                                aTGCCCTAAT‑AAA‑A‑TTAGGGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTC‑AACATATCCTGAATCAGACATACAATATCGCAATG‑AAAATCAATAATA‑TTTT‑AAGG‑AATATCTTCATG‑AAATCAAAAGACACCCTAAAGTGGTTCCCTGCGCAGCTTCCTGAAGTAAGAATTATCCTAGGGGATGCTGTAGTGGAAGTAGCAAAACAGGGAAGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAAc   >  1:1145764/1‑295 (MQ=32)                                                                                                                                                                                                                                                                                                                                                                                aTGCCCTAAT‑AAA‑A‑TTAGGGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTC‑AACATATCCTGAATCAGACATACAATATCGCAATG‑AAAATCAATAATA‑TTTT‑AAGG‑AATATCTTCATG‑AAATCAAAAGACACCCTAAAGTGGTTCCCTGCGCAGCTTCCTGAAGTAAGAATTATCCTAGGGGATGCTGTAGTGGAAGTAGCAAAACAGGGAAGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCAT‑GCTGGATAAc   >  1:1145765/1‑294 (MQ=17)                                                                                                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                           CAAAGGCATATAGGCTATATCACCTTGATA‑TTTTTC‑‑TTTTTCAGAT‑‑AAAAACTGTTATCTATGTATACTTTT‑‑AAA‑CCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAA‑CCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTAT‑ACCTG‑AAACGACAATGTTTATCTACGAA‑CTTT‑‑AAGAA‑CACCCAA‑GAT‑AAAAATT‑G‑TCAA‑CTATATCATATAT‑AA‑CACATT‑ACTAA‑TTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCC‑TTATCATA‑TTCAGCA‑‑‑‑‑‑‑‑‑TTTTT‑‑‑AGTCATGCCCTAAT‑AAA‑A‑TTAGGGA‑TTGGCATAT‑CCAAT‑AA‑CCCAGAC‑AAAACCGATGTATAAGTC‑AACATATCCTGAATCAGACATACAATATCGCAATG‑AAAATCAATAATA‑TTTT‑AAGG‑AATATCTTCATG‑AAATCAAAAGACACCCTAAAGTGGTTCCCTGCGCAGCTTCCTGAAGTAAGAATTATCCTAGGGGATGCTGTAGTGGAAGTAGCAAAACAGGGAAGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACA  >  NC_000913/1632616‑1633240

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.