New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	258632 =	31 (0.500)	48 (0.810) +TTT	18/372	1.8	61.8%	noncoding (44/768 nt)	IS1	repeat region
	?	NC_000913	= 279886	NA (NA)					noncoding (45/768 nt)	IS1	repeat region

AACGCCCATAATGCGGGCGGTTGCCCGGCATCCAACGCCATTCAT‑GGCCATATCAATGA‑TTTTCTGGTGCGTACC‑GGGTTGAGAAGCGGTGTAAGTG‑AACTGCAGTTGCCATG‑TTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGC‑TTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTC‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATA‑CTC‑AACATGAACTA‑GAT‑CTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAG‑ACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGT  >  NC_000913/279651‑280086                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                      acgccccATAATGCGGGCGGTTGCCCGGCATCC‑ACGCCATTCATGGGCCATATCAATGA‑TTTTCTGGTGCGTA‑C‑GGGTTGAGAAGCGGTGTAAGTGAAACTGCAG‑TGCCATG‑TTTTA‑GGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGC‑TTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTCAAAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACaa                                                                                                                                                         <  1:30139/285‑1 (MQ=11)                         ccGGCATCCAACGCCATTCAT‑GGCCATATCAATGATTTTTCTGGTGCGTACCGGGGTTGAGAAGCGGTGTAAGTG‑AACTGCAGTTGCCATG‑TTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGCTTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTC‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACAAATGGGCt                                                                                                                                                  <  1:745742/276‑1 (MQ=255)                         ccGGCATCCAACGCCATTCAT‑GGCCATATCAATGA‑TTTTCTGGTGCGTACC‑GGGTTGAGAAGCGGTGTAAGTG‑AACTGCAGTTGCCATG‑TTTTA‑GGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGC‑TTTTGCCGTTACGCACACCCCCGTCAGTAGCTGAACAGGAGGGACAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTC‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACaa                                                                                                                                                         <  1:745741/265‑1 (MQ=18)                                                 ccATATCAATGA‑TTTTCTGGTGCGTACC‑GGGTTGAGAAGCGGTGTAAGTG‑AACTGCAGTTGCCATG‑TTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGC‑TTTTGCCGTTACGCA‑CACCCCGTCAGTAGCTGAACAGGAGGGACAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTC‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAg                                                                                                                         <  1:745746/274‑1 (MQ=255)                                                                             c‑GGGTTGAGAAGCGGTGTAAGTG‑AACTGCAGTTGCCATG‑‑TTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGCTTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTC‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAata                                                                                                        <  1:30147/265‑1 (MQ=255)                                                                                  ttGAGAAGCGGTGTAAGTG‑AACTGCAGTTGCCATG‑TTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGC‑TTTTGCCGTTACGCA‑CACCCCGTCAGTAGCTGAACAGGAGGGACAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTC‑‑AAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCaa                                                                                                          <  1:745753/257‑1 (MQ=255)                                                                                     agaAGCGGTGTAAGTG‑AACTGCAGTTGCCATG‑TTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGC‑TTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTC‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑GAAACACAAATGGGCTAATTCGGCAGTACtt                                                                                                                                   <  1:30149/232‑1 (MQ=255)                                                                                       aaGCGGTGTAAGTG‑AACTGCAGTTGCCATG‑TTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGC‑TTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTC‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATA‑CTc                                                                                                  <  1:745754/261‑1 (MQ=255)                                                                                                                gCCATGTTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGC‑TTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTC‑AAAAACACCACTCATAC‑ACT‑AATCAGTAAAGTTTGGCA‑GCATCACCGAGG‑AACACaa                                                                                                                                                         >  1:30157/1‑187 (MQ=11)                                                                                                                                         agagATAGCGCTGATGTCCGGCAGTGC‑TTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTC‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCA‑CGA‑G‑AACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGccc                                                                                                            <  1:745794/203‑1 (MQ=255)                                                                                                                                               aGCGCTGATGTCCGGCAGTGC‑TTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTC‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACa                                                                                                                      <  1:745812/188‑1 (MQ=255)                                                                                                                                                           cGGCAGTGC‑TTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTC‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATA‑CTC‑AACATGAACTA‑GAT‑CTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAG‑ACACTGAAGTTCAAAACACCGAAAGAGATAATTg          <  1:745843/279‑1 (MQ=255)                                                                                                                                                               cgTGC‑TTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGGATAGAAACAGAAGCCACTGGAGCACCTC‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATA‑CTC‑AACATGAACTA‑GAT‑CTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAG‑ACACTGAAGTTCAAAACACCGAAAGAGATa              <  1:745860/271‑1 (MQ=255)                                                                                                                                                                                       ccccGTCAGTAGCTGAACAGGAGGGACAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTC‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACAAATGGGCTAATTCGGCAGTAC‑TTCCT‑AAAAGACATGTCTTGCCCAATATA‑CTC‑AACATGAACTA‑GAT‑CTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGAACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAg      >  1:745985/1‑255 (MQ=255)                                                                                                                                                                                        cccGTCAGTAGCTGAACAGGAGGGACAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTC‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCA‑CGA‑G‑AACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATA‑CTC‑AACATGAACTA‑GAT‑CTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAG‑ACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGgt  <  1:745944/258‑1 (MQ=255)                                                                                                                                                                                            tCAGTAGCTGAACAGGAGGGACAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTC‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACAAATGGGCTAATTc                                                                                                                                             >  1:745991/1‑121 (MQ=255)                                                                                                                                                                                             cAGTAGCTGAACAGGAGGGACAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTC‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATA‑CTC‑AACATGAACTA‑GAT‑CTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAG‑ACACTGAAGTTCAAAACACCGAAAGAGATAATTGa         <  1:745943/247‑1 (MQ=255)                                                                                                                                                                                             cAGTAGCTGAACAGGAGGGACAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTC‑‑AAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATA‑CTC‑AACATGAACTA‑GAT‑CTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAG‑ACACTGAAGTTCAAAACACCGAAAGAGATAATTGa         <  1:745945/246‑1 (MQ=255)                                                                                                                                                                                                  gCTGAACAGGAGGGACAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTC‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACAt                                                                                                                     <  1:745963/139‑1 (MQ=255)                                                                                                                                                                                                                aCAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTC‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACaa                                                                                                                                                         >  1:746052/1‑89 (MQ=40)                                                                                                                                                                                                                          aGAAACAGAAGCCACTGGAGCACCTC‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TT‑GCA‑GCATCACCGA‑G‑AACACAAATGGGCTAATTCGGCAGTACTTTCCT‑AAAAGACATGTCTTGCCCAATATA‑CTC‑AACATGAACTACGATACTGATTGCTGCTc                                                                    >  1:746082/1‑161 (MQ=25)                                                                                                                                                                                                                             aaCAGAAGCCACTGGAGCACCTC‑‑AAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATA‑CTCAAACATGAACTACGAT‑CTg                                                                              >  1:30238/1‑149 (MQ=25)                                                                                                                                                                                                                                    gCCACT‑GAGCACCTC‑‑AAAACACCA‑TCATACAACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATA‑CTC‑AACATGAACTA‑GAT‑CTGGTTGCTGCTCAGCTAAACAACAGACCGAGaaa                                              <  1:746042/172‑1 (MQ=255)                                                                                                                                                                                                                                            aGCACCTC‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCATGCATCACCGA‑G‑AACACAAATGGGCTAAt                                                                                                                                               <  1:746075/73‑1 (MQ=255)                                                                                                                                                                                                                                                   c‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACAAATGGGCTAATTCGGCAGTACTTTCCTa                                                                                                                              >  1:746122/1‑82 (MQ=255)                                                                                                                                                                                                                                                   c‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TT‑GCA‑GCATCACCGA‑G‑AACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACCTCAAACATGAACTA‑GAT‑CTGGTtgc                                                                         >  1:746124/1‑132 (MQ=18)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                      AACGCCCATAATGCGGGCGGTTGCCCGGCATCCAACGCCATTCAT‑GGCCATATCAATGA‑TTTTCTGGTGCGTACC‑GGGTTGAGAAGCGGTGTAAGTG‑AACTGCAGTTGCCATG‑TTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGC‑TTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT‑GATAGAAACAGAAGCCACTGGAGCACCTC‑AAAAACACCA‑TCATAC‑ACTAAATCAGT‑AAG‑TTGGCA‑GCATCACCGA‑G‑AACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATA‑CTC‑AACATGAACTA‑GAT‑CTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAG‑ACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGT  >  NC_000913/279651‑280086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.