| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381671 = | NA (NA) | 16 (0.360) | 12/368 | 2.8 | 100% | noncoding (412/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1468827 = | 0 (0.000) | noncoding (414/1331 nt) | IS2 | repeat region | |||||
TTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCT‑CCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTC‑TGAGAATGACGTGCAACTGCGCACGCGACA‑CCC‑‑‑GGAGACAAC‑‑GGCTGACTAAGCTTACT‑CCCCATCCCC‑‑‑GGGCAATAA‑GGGCGCGTGCGCTATCCACTTTttt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/381942‑381671‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAG‑CAGGCGCTGGAG‑TTC‑TTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACC‑ATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCT > NC_000913/1468827‑1469151 TTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCT‑CCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTC‑TGAGAATGACGTGCAACTGCGCACGCGACA‑CCC‑‑‑GGAGACAAC‑‑GGCTGACTAAGCTTACT‑CCCCATCCCC‑‑‑GGGCAATAA‑GGGCGCGTGCGCTATCCACTTTTTTTgccc > 1:216178/1‑276 CCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCT‑CCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTC‑TGAGAATGACGTGCAACTGCGCACGCGACA‑CCC‑‑‑GGAGACAAC‑‑GGCTGACTAAGCTTACT‑CCCCATCCCC‑‑‑‑GGCAATAA‑GGGCGCGTGCGCTATCCACTTTT > 1:535195/1‑251 AAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCT‑CCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTC‑TGAGAATGACGTGCAACTGCGCACGCGACA‑CCC‑‑‑GGAGACAAC‑‑GGCTGACTAAGCTTACT‑CCCCATCCCC‑‑‑GGGCAATAAGGGGCGCGTGCGCTATCCACTTTT > 1:608678/1‑230 CCCGACGATAACCATACGTTGGCAGCTCT‑CCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTC‑TGAGAATGACGTGCAACTGCGCACGCGACA‑CCC‑‑‑GGAGACAAC‑‑GGCTGACTAAGCTTACT‑CCCCATCCCC‑‑‑GGGCAATAA‑GGGCGCGTGCGCTATCCACTTTT > 1:1251611/1‑215 CCGACGATAACCATACGTTGGCAGCTCT‑CCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTC‑TGAGAATGACGTGCAACTGCGCACGCGACACCCC‑‑‑GGAGACAAC‑‑GGCTGACTAAGCTTACT‑CCCCATCCCC‑‑‑GGGCAATAA‑GGGCGCGTGCGCTATCCACTTTTTTTgccccgtcca < 1:758655/228‑11 CGATAACCATACGTTGGCAGCTCTCCCGAT‑ACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTC‑TGAGAATGACGTGCAACTGCGCACGCGACACCCC‑‑‑GGAGACAAC‑‑GGCTGACTAAGCTTACT‑CCCCATCCCC‑‑‑GGGCAATAA‑GGGCGCGTGCGCTATCCACTTTTTTTgccccgtc < 1:608682/222‑9 AACCATACGTTGGCAGCTCT‑CCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTC‑TGAGAATGACGTGCAACTGCGCACGCGACA‑CCC‑‑‑GGAGACAAC‑‑GGCTGACTAAGCTTACT‑CCCCATCCCC‑‑‑GGGCAATAA‑GGGCGCGTGCGCTATCCACTTTT > 1:608685/1‑206 ACCATACGTTGGCAGCTCT‑CCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTTGAGAATGACGTGCAACTGCGCACGCGACA‑CCC‑‑‑GGAGACAAC‑‑GGCTGACTAAGCTTACT‑CCCCATCCCC‑‑‑GGGCAATAA‑GGGCGCGTGCGCTATCCACTTTTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCcg > 1:1050567/1‑256 CGTTGGCAGCTCT‑CCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTC‑TGAGAATGACGTGCAACTGCGCACGCGACA‑CCC‑‑‑GGAGACAAC‑‑GGCTGACTAAGCTTACT‑CCCCATCCCC‑‑‑GGGCAATAA‑GGGCGCGTGCGCTATCCACTTTTT > 1:735346/1‑200 TACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTC‑TGAGAATGACGTGCAACTGCGCACGCGACA‑CCCCGGGGAGACAACGGGGCTGACTAAGCTTACTCCCCCATCCCCCGGGGGCAATAAGGGGCGCGTGCGCTATCCAC‑TTTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCATTTTTCCATCG‑TTTTtct > 1:402299/1‑235 CCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTC‑TGAGAATGACGTGCAACTGCGCACGCGACA‑CCC‑‑‑GGAGACAAC‑‑GGCTGACTAAGCTTACT‑CCCCATCCCC‑‑‑GGGCAATAA‑GGGCGCGTGCGCTATCCACTTTTTTTgcccgt > 1:1099233/1‑158 CGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTC‑TGAGAATGACGTGCAACTGCGCACGCGACA‑CCC‑‑‑GGAGACAAC‑‑GGCTGACTAAGCTTACT‑CCCCATCCCC‑‑‑GGGCAATAA‑GGGCGCGTGCGCTATCCACTTTTT > 1:318194/1‑155 TGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTC‑TGAGAATGACGTGCAACTGCGCACGCGACA‑CCC‑‑‑GGAGACAAC‑‑GGCTGACTAAGCTTACT‑CCCCATCCCC‑‑‑GGGCAATAA‑GGGCGCGTGCGCTATCCAC‑TTTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAG‑CAGGCGCTGGAG‑TTC‑TTTAATCT > 1:146961/1‑227 CAGTCATCGGTTCGTC‑TGAGAATGACGTGCAACTGCGCACGCGACA‑CCC‑‑‑GGAGACAAC‑‑GGCTGACTAAGCTTACT‑CCCCATCCCC‑‑‑GGGCAATAA‑GGGCGCGTGCGCTATCCACTTTTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAGTTTCA‑TTTTTCCTCG‑TTTTCTTTGCCGAG‑CAGGCGCTGGAGTTTCTTTTAATCTG > 1:965543/1‑209 ATCGGTTCGTC‑TGAGAATGACGTGCAACTGCGCACGCGACA‑CCC‑‑‑GGAGACAAC‑‑GGCTGACTAAGCTTACT‑CCCCATCCCC‑‑‑GGGCAATAA‑GGGCGCGTGCGCTATCCAC‑TTTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAG‑CAGGCGCTGGAG‑TTC‑TTTAATCTGCTTCATGGCG > 1:216192/1‑209 GCGCACGCGACA‑CCC‑‑‑GGAGACAAC‑‑GGCTGACTAAGCTTACT‑CCCCATCCCC‑‑‑GGGCAATAA‑GGGCGCGTGCGCTATCCACTTTTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAG‑CAGGCGCTGGAG‑TTCTTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAG > 1:318187/1‑197 ACGCGACA‑CCC‑‑‑GGAGACAAC‑‑GGCTGACTAAGCTTACT‑CCCCATCCCC‑‑‑GGGCAATAA‑GGGCGCGTGCGCTATCCACTTTT > 1:107054/1‑79 AAC‑‑GGCTGACTAAGCTTACT‑CCCCATCCCC‑‑‑GGGCAATAA‑GGGCGCGTGCGCTATCCACTTTTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAG‑CAGGCGCTGGAG‑TTC‑TTTAATCTGCTTCATGGC > 1:229185/1‑159 CTGACTAAGCTTACT‑CCCCATCCCC‑‑‑GGGCAATAA‑GGGCGCGTGCGCTATCCACTTTTTTTTTGCCCG‑CCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAG‑CAGGCGCTGGAG‑TTCTTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTTCTCCGGCGGCG > 1:216198/1‑198 TAAGCTTACT‑CCCCATCCCC‑‑‑GGGCAATAA‑GGGCGCGTGCGCTATCCACTTTTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑TTTT > 1:1190214/1‑107 TGCGCTATCCACTTTTTTTTTGCCCGTCCATATTTCAACGGCCTTCTTTt > 1:1229973/1‑49 TTTTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCATTTTTCCATCGTTTTTC‑TTGCCGAGCCAGGCGCTGGAGTTTCTTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTAT > 1:1180895/1‑176 TTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAG‑CAGGCGCTGGAG‑TTC‑TTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACC‑ATGTTGCCGGGCAA < 1:1061055/221‑1 TTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAG‑CAGGCGCTGGAG‑TTCTTTTAATCTGCTTCA > 1:758644/1‑95 TTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAG‑CAGGCGCTGGAG‑TTC‑TTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGG‑ACAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCTATG‑TGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCT‑AGACATCAATCATCT > 1:758618/1‑321 TTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCT‑CCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTC‑TGAGAATGACGTGCAACTGCGCACGCGACA‑CCC‑‑‑GGAGACAAC‑‑GGCTGACTAAGCTTACT‑CCCCATCCCC‑‑‑GGGCAATAA‑GGGCGCGTGCGCTATCCACTTTttt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/381942‑381671‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAG‑CAGGCGCTGGAG‑TTC‑TTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACC‑ATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCT > NC_000913/1468827‑1469151 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |