New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	381671 =	NA (NA)	16 (0.360)	12/368	2.8	100%	noncoding (412/1331 nt)	IS2	repeat region
	?	NC_000913	1468827 =	0 (0.000)					noncoding (414/1331 nt)	IS2	repeat region

CGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAG‑CAGGCGCTGGAG‑TTC‑TTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAA  >  NC_000913/1468555‑1469046                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                      ttggcattgatcgcaggcataccatcaagttctgcctgtctgcgaagcagcgcccatacccgacgataaccatacgttggcagctctccgataacatggtgtatacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttttttgccc                                                                                                                                                                                                                                >  1:216178‑M2/273‑276 (MQ=255)                       ccatcaagttctgcctgtctgcgaagcagcgcccatacccgacgataaccatacgttggcagctctccgataacatggtgtatacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcgcacgcgacacccggagacaacggctgactaagcttactccccatccccggcaataagggcgcgtgcgctatccactttt                                                                                                                                                                                                                                       >  1:535195‑M2/251‑251 (MQ=255)                                            aagcagcgcccatacccgacgataaccatacgttggcagctctccgataacatggtgtatacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataaggggcgcgtgcgctatccactttt                                                                                                                                                                                                                                       >  1:608678‑M2/230‑230 (MQ=255)                                                           ccgacgataaccatacgttggcagctctccgataacatggtgtatacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcgcacgcgacaccccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttttttgccccgtcca                                                                                                                                                                                                                          <  1:758655‑M2/14‑11 (MQ=255)                                                           cccgacgataaccatacgttggcagctctccgataacatggtgtatacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttt                                                                                                                                                                                                                                       >  1:1251611‑M2/215‑215 (MQ=255)                                                               cgataaccatacgttggcagctctcccgatacatggtgtatacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcgcacgcgacaccccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttttttgccccgtc                                                                                                                                                                                                                            <  1:608682‑M2/12‑9 (MQ=255)                                                                    accatacgttggcagctctccgataacatggtgtatacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtcttgagaatgacgtgcaactgcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCatccg                                                                                                                                                                               >  1:1050567‑M2/206‑256 (MQ=255)                                                                    aaccatacgttggcagctctccgataacatggtgtatacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttt                                                                                                                                                                                                                                       >  1:608685‑M2/206‑206 (MQ=255)                                                                           cgttggcagctctccgataacatggtgtatacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttttt                                                                                                                                                                                                                                      >  1:735346‑M2/199‑200 (MQ=255)                                                                                               tacggagaagcacatccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcgcacgcgacaccccggggagacaacggggctgactaagcttactcccccatcccccgggggcaataaggggcgcgtgcgctatccacttTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCATTTTTCCAtcg‑tttttct                                                                                                                                                                        >  1:402299‑M2/179‑235 (MQ=255)                                                                                                                       ccgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttttttgcccgt                                                                                                                                                                                                                              >  1:1099233‑M2/155‑158 (MQ=255)                                                                                                                        cgtatcatcagtgtgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttttt                                                                                                                                                                                                                                      >  1:318194‑M2/154‑155 (MQ=255)                                                                                                                                      tgacgactgcggcggccatccatccagtcatcggttcgtctgagaatgacgtgcaactgcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAG‑CAGGCGCTGGAG‑TTC‑TTTAATCt                                                                                                                                       >  1:146961‑M2/140‑227 (MQ=255)                                                                                                                                                             cagtcatcggttcgtctgagaatgacgtgcaactgcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAGTTTCA‑TTTTTCCTCG‑TTTTCTTTGCCGAG‑CAGGCGCTGGAGTTTCTTTTAATCTg                                                                                                                                      >  1:965543‑M2/117‑209 (MQ=255)                                                                                                                                                                   atcggttcgtctgagaatgacgtgcaactgcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccacttTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAG‑CAGGCGCTGGAG‑TTC‑TTTAATCTGCTTCATggcg                                                                                                                            >  1:216192‑M2/111‑209 (MQ=255)                                                                                                                                                                                               gcgcacgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAG‑CAGGCGCTGGAG‑TTCTTTTAATCTGCTTCATGGCGGCAGCAAGTTCagag                                                                                                             >  1:318187‑M2/83‑197 (MQ=255)                                                                                                                                                                                                   acgcgacacccggagacaacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttt                                                                                                                                                                                                                                       >  1:107054‑M2/79‑79 (MQ=255)                                                                                                                                                                                                                    aacggctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAG‑CAGGCGCTGGAG‑TTC‑TTTAATCTGCTTCATggc                                                                                                                             >  1:229185‑M2/62‑159 (MQ=255)                                                                                                                                                                                                                         ctgactaagcttactccccatccccgggcaataagggcgcgtgcgctatccactttTTTTTTGCCCG‑CCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAG‑CAGGCGCTGGAG‑TTCTTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTTCTCCGgcggcg                                                                                 >  1:216198‑M2/57‑198 (MQ=255)                                                                                                                                                                                                                              taagcttactccccatccccgggcaataagggcgcgtgcgctatccactttTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑tttt                                                                                                                                                                           >  1:1190214‑M2/52‑107 (MQ=255)                                                                                                                                                                                                                                                                  tgcgctatccactttTTTTTTGCCCGTCCATATTTCAACGGCCTTctttt                                                                                                                                                                                                     >  1:1229973‑M2/16‑49 (MQ=255)                                                                                                                                                                                                                                                                              tttTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCATTTTTCCATCGTTTTTC‑TTGCCGAGCCAGGCGCTGGAGTTTCTTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTAt                                                      >  1:1180895‑M2/4‑176 (MQ=255)                                                                                                                                                                                                                                                                                tTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAG‑CAGGCGCTGGAG‑TTC‑TTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCaa  <  1:1061055‑M2/220‑1 (MQ=255)                                                                                                                                                                                                                                                                                 TTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAG‑CAGGCGCTGGAG‑TTCTTTTAATCTGCTTCa                                                                                                                                 >  1:758644‑M2/1‑95 (MQ=255)                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                      CGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCCCATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTATCATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGCACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATA‑TTCAACGG‑CTTCTTTGAGGAG‑TTCA‑TTTTCCATCG‑TTTTC‑TTGCCGAG‑CAGGCGCTGGAG‑TTC‑TTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTG‑TTCTCCGGCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACACCATGTTGCCGGGCAA  >  NC_000913/1468555‑1469046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.