| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4504265 | 33 (0.730) | 16 (0.350) | 14/374 | 2.4 | 32.6% | coding (208/1218 nt) | yjhB | putative sialic acid transporter |
| ? | NC_000913 | 4504269 = | 33 (0.730) | coding (212/1218 nt) | yjhB | putative sialic acid transporter | |||||
AAATATGGCAACAGCATGGTATAAACAAGTTAATCCACCACAACGGAAAGCTC‑‑TTTTTTC‑CGCATGGCTTGGATATGTATTTGATGGCTTTGA‑TTTTATGATGATA‑TTTT‑ACATTCTTCATA‑TTAT‑AAAAGCAGATCTTGGCATTACGGA‑TA‑TTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAGCCAGACCTATTGGAGGTGG‑TTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4504054‑4504265‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGCCATGGCTGATAAATATGGTCGTAAGCCAATGATGATGT‑GGGCAA‑TTTTCA‑TTTACTCAGTCGGAACAGGCC‑TTAGCGGTATTGCTACAAAC‑TTATATATGCTCGCAG‑TTTGCCG‑TTTTATTGTTGGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAG‑AAAG‑TTGGCCTAAAAATCTTCAA‑TCTAAAGCTAGTGCTTTTTTGGTAAGTGGTTTTTCTGTTGGAAATA‑TTATTG‑CGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGATGG > NC_000913/4504269‑4504561 AAATATGGCAACAGCATGGTATAAACAAGTTAATCCACCACAACGGAAAGCTCTTTTTTTTC‑CGCATGGCTTGGATATGTATTTGATGGCTTTGATTTTTATGATGATA‑TTTT‑ACATTCTTCATATTTAT‑AAAAGCAGATCTTGGCATTACGGATTATTTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAGCCAGACCTATTGGAGGTGG‑TTTTTGTttgcctgg > 1:1215721/1‑220 ATAAACAAGTTAATCCACCACAACGGAAAGCTCTTTTTTTTC‑CGCATGGCTTGGATATGTATTTGATGGCTTTGA‑TTTTATGATGATA‑TTTT‑ACATTCTTCATA‑TTAT‑AAAAGCAGATCTTGGCATTACGGA‑TA‑TTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAGCCAGACCTATTGGAGGTGG‑TTTTTGTTGCCTGGCTGATAAATATGGTCGTAAGCCAATGATGATGT‑GGGCAATTTTTCA‑TTTACTCAGTCGGAACAGGCCTTTAGCGGTATTGCTACAA > 1:1001159/1‑289 gAAGCTC‑‑TTTTTCCTTGCATGGCTTGGATATGTATTTGATGGCTTTGA‑TTTTATGATGATATTTTT‑ACATTCTTCATA‑TTATAAAAAGCAGATCTTGGCATTACGGA‑TA‑TTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAGCCAGACCTATTGGAGGTGGTTTTTTGTGCCATGGCTGATAAATATGGTCGTAAGCCAATGATGATGT‑GGGCAA‑TTTTCA‑TTTACTCAGTCGGAACAGGCC‑TTAGCGGTATTGCTACAAAC‑TTATATATGCTCGCAG‑TTTGCCG‑TTTTATTGTTGGCTTAGG > 1:318629/2‑306 TTTTTTC‑CGCATGGCTTGGATATGTATTTGATGGCTTTGA‑TTTTATGATGATA‑TTTT‑ACATTCTTCATA‑TTAT‑AAAAGCAGATCTTGGCATTACGGA‑TA‑TTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAGCCAGACCTATTGGAGGTGG‑TTTTTGTGCCATGGCTGATAAATATGGTCGTAAGCCAATGATGATGT‑GGGCAA‑TTTTCA‑TTTACTC > 1:318631/1‑220 TTGATGGCTTTGA‑TTTTATGATGATA‑TTTTAACATTCTTCATA‑TTAT‑AAAAGCAGATCTTGGCATTACGGA‑TA‑TTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAGCCAGACCTATTGGAGGTGGTTTTTTGTGCCATGGCTGATAAATATGGTCGTAAGCCAATGATGAT > 1:318632/1‑174 TGATGGCTTTGA‑TTTTATGATGATA‑TTTT‑ACATTCTTCATA‑TTAT‑AAAAGCAGATCTTGGCATTACGGA‑TA‑TTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAGCCAGACCTATTGGAGGTGGTTTTTTGTGCCATGGCTGATAAATATGGTCGTAAGCCAATGATGATGT‑GGGCAA‑TTTTCA‑TTTACTCAGTCGGAACAGGCC‑TTAGCGGTA > 1:318633/1‑216 TTTT‑ACATTCTTCATA‑TTAT‑AAAAGCAGATCTTGGCATTACGGA‑TA‑TTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAGCCAGACCTATTGGAGGTGG‑TTTTTGTGCCATGGCTGATAAATATGGTCGTAAGCCAATGATGATGT‑GGGCAA‑TTTTCA‑TTTACTCAGTCGGAACAGGCC‑TTAGCGGTATTGCTACAAAC‑TTATATATGCTCGCAG‑TTTGCCG‑TTTTATTGTTGGCTTAGGGATGTCTGGTGAATAT > 1:318634/1‑258 TT‑ACATTCTTCATA‑TTAT‑AAAAGCAGATCTTGGCATTACGGA‑TA‑TTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAGCCAGACCTATTGGAGGTGGTTTTTTGTGCCATGGCTGATAAATATGGTCGTAAGCCAATGATGATGT‑GGGCAA‑TTTTCA‑TTTACTCAGTCGGAACA‑GCC‑TTAGCGGTATTGCTACAAAC‑TTATATA > 1:920339/1‑206 TTAATAGGGACAGTGGCCTTCATAGCCAGACCTATTGGAGGTGGTTTTTTGTGCCATGGCTGATAAATATGGTCGTAAGCCAATGATGATGTGGGGCAA‑TTTTCA‑TTTACTCAGTCGGAACAGGCC‑TTAGCGGTATTGCTACAAAC‑TTATATATGCTCGCAGTTTTGCCG‑TTTTATTGTTGGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAG‑AAAG‑TTGGCCTAAAAATCTTCAA‑TCTAAAGCTAGTGC‑TTTTTGGT‑AGTGG‑TTTTCTGTTGGAAATA‑TTATTG‑CGGCAC‑AATAATCCCTCAGTTTG > 1:920347/1‑324 TAATAGGGACAGTGGCCTTCATAGCCAGACCTATTGGAGGTGGTTTTTTGTGCCATGGCTGATAAATATGGTCGTAAGCCAATGATGATGT‑GGGCAA‑TTTTCA‑TTTACTCAGTCGGAACAGGCC‑TTAGCGGTATTGCTACAAAC‑TTATATATGCTCGCAGTTTTGCCGTTTTTATTGTTGGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAGAAAAG‑TTGGCCTAAAAATCTTCAA‑TCTAAAGCTAGTGCTTTTTTGGTAAGTGGTT > 1:318636/1‑283 GGCCTTCATAGCCAGACCTATTGGAGGTGGTTTTTTGTGCCATGGCTGATAAATATGGTCGTAAGCCAATGATGATGT‑GGGCAA‑TTTTCA‑TTTACTCAGTCGGAACAGGCC‑TTAGCGGTATTGCTACAAAC‑TTATATATGCTCGCAG‑TTTGCCG‑TTTTATTGTTGGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAG‑AAAG‑TTGGCC > 1:318638/1‑223 ATAGCCAGACCTATTGGAGGTGGTTTTTTGTGCCATGGCTGATAAATATGGTCGTAAGCCAATGATGATGT‑GGGCAA‑TTTTCA‑TTTACTCAGTCGGAACAGGCC‑TTAGCGGTATTGCTACAAAC‑TTATATATGCTCGCAG‑TTTGC > 1:920351/1‑145 TTGGAGGTGGTTTTTTGTGCCATGGCTGATAAATATGGTCGTAAGCCAATGATGATGT‑GGGCAA‑TTTTCA‑TTTACTCAGTCGGAACAGGCC‑TTAGCGGTATTGCTACAAAC‑TTATATATGCTCGCAG‑TTTGCCG‑TTTTATTGTTGGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAG‑AAAGTTTGGCCTAAAAATCTTCAA‑TCTAAAGCTAGTGC‑TTTTTGGTAAGTGGTTTTTCTGTTGGAAATATTTATTGTCGGCAC‑AATAAT‑CCTCAGTTTGCTG‑AGTATATGGATGG > 1:318639/1‑308 GGAGGTGGTTTTTTGTGCCATGGCTGATAAATATGGTCGTAAGCCAATGATGATGTGGGGCAA‑TTTTCATTTTACTCAGTCGGAACAGGCC‑TTAGCGGTATTGCTACAAAC‑TTATATATGCTCGCAG‑TTTGCCG‑TTTTATTGTTGGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAG‑AAAG‑TTGGCCTAAAAATCTTCAATTCTAAAGCTAGTGCTTTT > 1:920352/1‑235 GGAGGTGGTTTTTTGTGCCATGGCTGATAAATATGGTCGTAAGCCAATGATGATGT‑GGGCAATTTTTCA‑TTTACTCAGTCGGAACAGGCCTTTAGCGGTATTGCTACAAACTTTATATATGCTCGC > 1:1033854/1‑126 GG‑TTTTTGTGCCATGGCTGATAAATATGGTCGTAAGCCAATGATGATGT‑GGGCAATTTTTCA‑TTTACTCAGTCGGAACAGGCC‑TTAGCGGTATTGCTACAAACTTTATATATGCTC > 1:970712/1‑116 AAATATGGCAACAGCATGGTATAAACAAGTTAATCCACCACAACGGAAAGCTC‑‑TTTTTTC‑CGCATGGCTTGGATATGTATTTGATGGCTTTGA‑TTTTATGATGATA‑TTTT‑ACATTCTTCATA‑TTAT‑AAAAGCAGATCTTGGCATTACGGA‑TA‑TTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAGCCAGACCTATTGGAGGTGG‑TTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4504054‑4504265‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGCCATGGCTGATAAATATGGTCGTAAGCCAATGATGATGT‑GGGCAA‑TTTTCA‑TTTACTCAGTCGGAACAGGCC‑TTAGCGGTATTGCTACAAAC‑TTATATATGCTCGCAG‑TTTGCCG‑TTTTATTGTTGGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAG‑AAAG‑TTGGCCTAAAAATCTTCAA‑TCTAAAGCTAGTGCTTTTTTGGTAAGTGGTTTTTCTGTTGGAAATA‑TTATTG‑CGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGATGG > NC_000913/4504269‑4504561 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |