New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	17 (0.370)	38 (0.910)	32/342	0.3	69.4%	coding (305/630 nt)	ycfK	e14 prophage; protein StfP
	?	NC_000913	= 1209602	18 (0.430)					pseudogene (54/537 nt)	stfE	e14 prophage; putative side tail fiber protein fragment

AATCGTTGCATCAGTCACAATCGTGGATCTTGACGGTAATCCATGAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCC‑GTCATCCC‑AGCCACGAATAAA‑CTCACCACGTAAATCAGGCAATTTATTTGT‑CGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGCC‑TTC‑‑T‑CCCAAACCAAC‑G‑TTTATGAAAATGAA‑G‑AAATAACAAGC‑AAATGGCATCATTCCTGCTTTTACCAGGGGGA‑TTTAAC‑ATGCTTATTGGCTATGTACGCGTATCAAC‑AAATGACC‑AGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGG  >  NC_000913/1209317‑1209885                                                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                                         aaTCGTTGCATCAGTCACAATCGTGGATCTTGACGGTAATCCATGAGCATGATCCTCCGTTGCATACCCTCGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCC‑GTCATCCC‑AGCCACGAATAAA‑CTCACCACGTAAATCAGGCAATTTA‑TTGT‑CGG‑ATAAGC‑‑‑TT‑CCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CATTTT‑CAGCCAGCCTGTT‑GGCGGAGTT‑GGCTGAA‑GGCCA‑CGGAACCGGGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGCC‑TTC‑‑T‑CCCAAACCAAC‑G‑‑TTATGAAAATGAA‑G‑AAATAACAAGC‑AAATGGCATCATTCCTGCTTTTAc                                                                                                                                                                                                                             >  1:503091/1‑352 (MQ=255)    gattgcATCAGTCACAATCGTGGATCTTGACGGTAATCCATGAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCC‑GTCATCCC‑AGCCACGAATAAA‑CTCACCACGTAAATCAGGCAATTTATTTGT‑CGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttc                                                                                                                                                                                                                                                                                   >  1:503089‑M2/3‑283 (MQ=255)                       gTGGATCTTGACGGTAATCCATGAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCC‑GTCATCCC‑AGCCACGAATAAA‑CTCACCACGTAAATCAGGCAATTTATTTGT‑CGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAGAAAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACCAAACA‑GGTAATG‑CAG‑AGCC‑TTC‑‑T‑CCCAAACC‑AC‑G‑TTTATGAAAATGAA‑G‑aaa                                                                                                                                                                                                                                                              <  1:990957/301‑1 (MQ=255)                                                                           tACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCC‑GTCATCCC‑AGCCACGAATAAA‑CTCACCACGTAAATCAGGCAATT‑ATTTGT‑CGG‑ATAAGCC‑TT‑GCCAGTTCCGGGGT‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTTTCAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGGG‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaag                                                                                                                                                                                                         <  1:503105‑M2/310‑98 (MQ=255)                                                                              ttAAAATAGAGCGACCTGTATCAATCCCCCGCCCCGTCATCCCCAGCCACGAATAAA‑CTCACCACGTAA‑TCAGGCAATTTATTTGT‑CGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctccccaaaccaaggttttcgagagccg                                                                                                                                                                                                                                                                          >  1:503102‑M2/1‑210 (MQ=255)                                                                                       gagcacctgTATCAATCCCCCGCCC‑GTCATCCCCAGCCACGAATAAAACTCACCACGTAA‑TCAGGCAATTTATTTGT‑CGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAA‑G‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctccccaaaccaaggttttcgagagccgtttgcacagtgccatccgattt                                                                                                                                                                                                                                                    >  1:503103‑M2/5‑200 (MQ=255)                                                                                                  tCAATCCCCCGCCC‑GTCATCCC‑AGCCACGAATAAA‑CTCACCACGTAAATCAGGCAATT‑ATTTGT‑CGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TT‑‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGGGGACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgttgacaca                                                                                                                                                                                                                                                                   <  1:503108‑M2/228‑40 (MQ=255)                                                                                                             ccc‑gTCATCCC‑AGCCACGAATAAA‑CTCACCACGTAAATCAGGCAATTTATTTGT‑CGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAGGC‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATGGCAG‑AGccttctcccaa                                                                                                                                                                                                                                                                                               <  1:89254‑M2/191‑12 (MQ=255)                                                                                                                            ccACGAATAAA‑CTCACCACGTAAATCAGGCAATTTATTTGT‑CGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccg                                                                                                                                                                                                                                                                           >  1:503110‑M2/1‑165 (MQ=255)                                                                                                                                  aTAAA‑CTCACCACGTAAATCAGGCAATTTATTTGT‑CGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctccccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagt                                                                                                                                                                                            >  1:502899‑M2/1‑159 (MQ=255)                                                                                                                                   tAAA‑CTCACCACGTAAATCAGGCAATTTATTTGTTCGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgtttgcacagtgcca                                                                                                                                                                                                                                                             <  1:1241254‑M2/204‑46 (MQ=255)                                                                                                                                    aaa‑CTCACCACGTAAATCAGGCAATTTATTTGT‑CGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcaaacggattcttgcggcttaacagcagcgcgcg                                                                                                                                                                                                            >  1:971938‑M2/1‑157 (MQ=255)                                                                                                                                             cacGTAAATCAGGCAATTTATTTGT‑CGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATGT‑CA‑TT‑‑CAGCCAGCCTGTT‑GGCGGAG‑TAGGCTGAA‑GGCCAACGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcca                                                                                                                                                                                                                                           >  1:1247253‑M2/1‑150 (MQ=255)                                                                                                                                                      cAGGCAATTTATTTGT‑CGG‑ATAAGCCTTTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CATTTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACCGGGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGCC‑TTC‑‑T‑CCCAAACCAAC‑G‑TTTATGAAAATGAA‑G‑AAATAACAAGC‑AAATGGCATCATTCCTGCTTTTACCAGGGGGA‑tta                                                                                                                                                                                                                 >  1:503116/1‑221 (MQ=255)                                                                                                                                                           aaTTTATTTGT‑CGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑TAATTCTTCAGCAG‑AAAAAG‑CGGGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAGAAGCCATTC‑‑T‑CCCAAACCAAC‑G‑TTTATGAAAATGAA‑G‑AAATAACAAGC‑AAATGGCATCATTCCTGCTTTTACCAGGGGGA‑TTTaa                                                                                                                                                                                                               <  1:1179051/220‑1 (MQ=255)                                                                                                                                                              ttatttGT‑CGGGATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatcc                                                                                                                                                                                                                                                          >  1:503117‑M2/1‑133 (MQ=255)                                                                                                                                                              ttatttGT‑CGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGGG‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtcgccgccccttctcca                                                                                                                                                                    <  1:503118‑M2/267‑135 (MQ=255)                                                                                                                                                               tatttGT‑CGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CATTTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGCC‑TTC‑‑T‑CCCAAACCAAC‑GTTTTATGAAAATGAA‑G‑AAATAACAAGC‑AAATGGCATCATTCCTGCTTTTACCAGGGGGA‑TTTAAC‑ATGCTTATTGGCTATGTACGCGTATCAAC‑AAATGACC‑AGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGc                                                                                                                          >  1:1122843/1‑296 (MQ=255)                                                                                                                                                               tatttGT‑CGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGCC‑TTC‑‑T‑CCCAAACCAAC‑GTTTTATG‑AAATGAA‑G‑AAATAACAAGC‑AAATGGCATCATTCCTGCTTTTACCAGGGGGA‑TTTAAC‑ATGCTTATTGGCTATGTACGCGTATCAAC‑AAATGACC‑AGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGc                                                                                                                          >  1:1063769/1‑294 (MQ=255)                                                                                                                                                                  ttGT‑CGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTGTCA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGCC‑TTCCGT‑CCCAAACCAAC‑G‑TTTATGAAAATGAAGG‑AAATAACAAGC‑a                                                                                                                                                                                                                                                    <  1:89256/177‑1 (MQ=255)                                                                                                                                                                  ttGT‑CGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑TAGGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGCC‑TTC‑‑T‑CCCAAACCAAC‑G‑TTTATGAAAATGAA‑G‑AAATAACAAGC‑AAATGGCATCATTCCTGCTTTTACCAGGGGGA‑TTTAAC‑ATGCt                                                                                                                                                                                                        <  1:503115/216‑1 (MQ=255)                                                                                                                                                                  ttGT‑CGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGCC‑TTC‑‑T‑CCCAAACCAACAG‑TTTATGAAAATGAA‑G‑AAATAACAAGC‑AAATGGCATCATTCCTGCTTTTACCAGGGGGA‑TTTAAC‑ATGCt                                                                                                                                                                                                        <  1:503114/216‑1 (MQ=255)                                                                                                                                                                  ttGT‑CGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGCC‑TTC‑‑T‑CCCAAACCAACAG‑TTTATGAAAATGAA‑G‑AAATAACAAGC‑AAATGGCATCATTCCTGCTTTTACCAGGGGGA‑TTTAAC‑ATGCt                                                                                                                                                                                                        <  1:503113/216‑1 (MQ=255)                                                                                                                                                                                     tGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTTTCAGCCAGCCTGTT‑GGCGGAG‑TTGGCTGAA‑GGCCA‑CGGAACC‑GGGG‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttcttcccaaaccaaggttttcgagagccgtttgcacagtgccatccgattgatatcgccaaacggattcttgcggcttaacagcagcgcgacgaagtgcggtaagtaactggtcgtgccgcccttctccaggc                                                                                                                                                                  <  1:503120‑M2/251‑137 (MQ=255)                                                                                                                                                                                     tGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGCC‑TTC‑‑T‑CCCAAACCAAC‑GTTTTATGAAAATGAA‑G‑AAATAACAAGC‑AAATGGCATCATTCCTGCTTTTACCAGGGGGA‑tt                                                                                                                                                                                                                  >  1:89258/1‑191 (MQ=255)                                                                                                                                                                                         aGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATGACAG‑AGccttctcccaaaaccaaggttttc                                                                                                                                                                                                                                                                                  >  1:1072365‑M2/1‑109 (MQ=255)                                                                                                                                                                                            tCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctccccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaaacggattcttgcggcttaacagcagcgcgcg                                                                                                                                                                                                         >  1:502902‑M2/1‑105 (MQ=255)                                                                                                                                                                                             ccGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACCGGGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGCC‑TTC‑‑T‑CCCAAACCAAC‑GTTTTATG‑AAATGAA‑G‑AAATAACAAGC‑AAATGGCATCATTCCTGCTTTTACCAGGGGGA‑TTTAAC‑ATGCTTATTGGCTATGTACGCGTATCAAC‑AAATGACC‑AGAACACAGATCTACAACGTAAt                                                                                                                                               >  1:1158397/1‑247 (MQ=255)                                                                                                                                                                                                        cttcAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagttcctcctgcaacatgtcaaagtagtcatcatcagatcggtggcaggcg                                                                                  <  1:1019810‑M2/311‑217 (MQ=255)                                                                                                                                                                                                        cttcAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGCC‑TTC‑‑TCCCCAAACCAAC‑G‑TTTATGAAAATGAA‑G‑AAATAACAAGCAAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTTAACAATGCTTATTGGCTATGTACGCGTATCAACAAAATGACCAAGAACACAGATCTACAACGt                                                                                                                                                  <  1:503121/240‑1 (MQ=255)                                                                                                                                                                                                           cagcag‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaacccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcg                                                                                                                                                                                                   <  1:1166945‑M2/195‑104 (MQ=255)                                                                                                                                                                                                           cagcag‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccgatgcctccaccacgctgcaaagttcctcctgcaacatgtcaaagtagtcatcatccagatcggtg                                                                                         <  1:1141963‑M2/301‑210 (MQ=255)                                                                                                                                                                                                                    aaaG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACCGGGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGCC‑TTC‑‑T‑CCCAAACCAAC‑G‑TTTATGAAAATGAA‑G‑AAATAACAAGC‑AAATGGCATCATTCCTGCTTTTACCAGGGGGA‑TTTAAC‑ATGCTTATTGGCTATGTACGCGTATCAAC‑AAATGACC‑AGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGAt                                                                                                                            >  1:503122/1‑246 (MQ=255)                                                                                                                                                                                                                    aaaG‑C‑GGCACC‑TTG‑CA‑TTT‑CAGCCAGCCTGTTTGGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaag                                                                                                                                                                                                                                                                                         <  1:1104803‑M2/101‑18 (MQ=255)                                                                                                                                                                                                                                   tG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAAAGGCCA‑CGGAACC‑GGGG‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaa                                                                                                                                                                                                                        >  1:89135‑M2/1‑73 (MQ=255)                                                                                                                                                                                                                                    g‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgtttgcac                                                                                                                                                                                                                                                                    >  1:89261‑M2/1‑70 (MQ=255)                                                                                                                                                                                                                                    g‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGCC‑TTC‑‑T‑CCC‑AACCAAC‑GTTTTATGAAAATGAA‑G‑AAATAACAAGC‑AAATGGCATCATTCCTGCTTTTACCAGGGGGA‑TTTAAC‑ATGCTTATTGGCTATGTACGCGTATCAAC‑AAATGACC‑AGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGaaaaa                                                               >  1:968527/1‑292 (MQ=255)                                                                                                                                                                                                                                      cA‑TTT‑CAGCCAG‑CTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGCC‑TTC‑‑T‑CCCAAACCAAC‑G‑TTTATG‑AAATGAA‑G‑AAATAACAAGC‑AAATGGCATCATTCCTGCTTTTACCAGGGGGA‑TTTAAC‑ATGCTTATTGGCTATGTACGCGTATCAAC‑AAATGACC‑AGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGA‑TTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTG‑AAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTgg                    >  1:89262/1‑330 (MQ=255)                                                                                                                                                                                                                                           t‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagttc                                                                                                                                <  1:89131‑M2/235‑171 (MQ=255)                                                                                                                                                                                                                                           t‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtg                                                                                                                                                                                   <  1:503123‑M2/184‑120 (MQ=255)                                                                                                                                                                                                                                             cagccagcCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagttcctcctgcaacatgtcaaagtagtcatca                                                                                                    <  1:89128‑M2/262‑199 (MQ=255)                                                                                                                                                                                                                                               gccagccTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggtttcgagagccgt                                                                                                                                                                                                                                                                           >  1:1197636‑M2/1‑62 (MQ=255)                                                                                                                                                                                                                                                             cGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGCC‑TTC‑‑T‑CCCAAACCAAC‑G‑TTTATGAAAATGAA‑G‑AAATAACAAGC‑AAATGGCATCATTCCTGCTTTTACCAGGGGGA‑TTTAAC‑ATGCTTATTGGCTATGTACGCGTATCAAC‑AAATGACC‑AGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGaaaaggcc                                                                          <  1:89263/260‑6 (MQ=255)                                                                                                                                                                                                                                                                      gCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgcccctt                                                                                                                                                                          <  1:502896‑M2/170‑129 (MQ=255)                                                                                                                                                                                                                                                                             ggCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgtttgc                                                                                                                                                                                                                                                                      >  1:89264‑M2/1‑36 (MQ=255)                                                                                                                                                                                                                                                                              gCCA‑CGGAACC‑GGGG‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagttcctcctgcaacatgtcaa                                                                                                               >  1:89129‑M2/1‑36 (MQ=255)                                                                                                                                                                                                                                                                              gCCA‑CGGAACC‑GGG‑‑ACACC‑AACATGGTAATG‑CAG‑AGCC‑TTC‑‑TCCCCAAACCAAC‑G‑TTTATGAAAATGAA‑GAAAATAACAAGC‑AAATGGCATCATTCCTGCTTTTACCAGGGGGA‑TTTAAC‑ATGCTTATTGGCTATGTACGCGTATCAAC‑AAATGACC‑AGAACACAGATCTACAACGTAATGCGCTGAACtgt                                                                                                                                   <  1:503124/192‑1 (MQ=255)                                                                                                                                                                                                                                                                                        cc‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctccccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaagttcctcctgcaacatgtcaaagtagtcatcatccagatcggtggcaggcgtgccg                                                                             >  1:502888‑M2/1‑26 (MQ=255)                                                                                                                                                                                                                                                                                        cc‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattctgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagttcctcctgcaacatgtcaaagtagtcatcatccagatcggtggcaggcgtgccggtctgggggttaccacgggtaaaaccgttcttacccgcgccgaacttatccttctg                     >  1:978187‑M2/1‑26 (MQ=255)                                                                                                                                                                                                                                                                                        cc‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttc                                                                                                                                                                                                                                                                                   >  1:1152499‑M2/1‑26 (MQ=255)                                                                                                                                                                                                                                                                                            gg‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctccccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaaagttcctcctgcaacatgtcaaagtagtcatcat                                                                                                 >  1:502890‑M2/1‑23 (MQ=255)                                                                                                                                                                                                                                                                                            gg‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaaagttcctcctgcaacatgtcaaagtagtcatcatccagatcggtggcaggcgtgccggtctgggggtt                                                                 >  1:502887‑M2/1‑23 (MQ=255)                                                                                                                                                                                                                                                                                             g‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagttcctcctgcaacatgtcaaagtagtcatcatccagatcggtggcaggcgtgccggtct                                                                        >  1:89127‑M2/1‑22 (MQ=255)                                                                                                                                                                                                                                                                                                acacC‑AACA‑GGTAATG‑CAG‑AGccttctccccaaaccaaggttttcgagagccgtttgcacagtgccgatccgatttgatatcgccaaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaaagttcctcctgcaacatgtcaaagtagtcatcatccagatcggtggcaggcgtgccggtctgggggttaccacgggtaaaaccgttcttacccgcgccgaactta                        >  1:502884‑M2/1‑21 (MQ=255)                                                                                                                                                                                                                                                                                                   cc‑AACA‑GGTAATG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaagttcctcctgcaacatgtcaaagtagtcatcatccagatcggtggcag                                                                                      >  1:1063057‑M2/1‑18 (MQ=255)                                                                                                                                                                                                                                                                                                              aaTG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggatggcaccggatgcctccaccacgctgcaaagttcctcctgcaacatgtcaaaagtagtcatcatccagatcggtggcaggcgtgccggtctgggggttaccacgggtaaaaccgttcttacccgcgccgaacttatccttct                    <  1:502883‑M2/287‑279 (MQ=255)                                                                                                                                                                                                                                                                                                               aTG‑CAG‑AGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcaaacggatcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagttcctcctgcaacatgtcaaagtagtcatcatccagatcggtggcaggcgtgccggtctgggggttaccacgggtaaaaccgttcttacccgcgccgaacttatccttctgcgcggttttcgtgtctatac  >  1:89123‑M2/1‑8 (MQ=255)                                                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                                         AATCGTTGCATCAGTCACAATCGTGGATCTTGACGGTAATCCATGAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCC‑GTCATCCC‑AGCCACGAATAAA‑CTCACCACGTAAATCAGGCAATTTATTTGT‑CGG‑ATAAGCC‑TTTGCCAGTTCCGGG‑T‑ATTCTTCAGCAG‑AAAAAG‑C‑GGCACCATTG‑CA‑TTT‑CAGCCAGCCTGTT‑GGCGGAG‑T‑GGCTGAA‑GGCCA‑CGGAACC‑GGG‑‑ACACC‑AACA‑GGTAATG‑CAG‑AGCC‑TTC‑‑T‑CCCAAACCAAC‑G‑TTTATGAAAATGAA‑G‑AAATAACAAGC‑AAATGGCATCATTCCTGCTTTTACCAGGGGGA‑TTTAAC‑ATGCTTATTGGCTATGTACGCGTATCAAC‑AAATGACC‑AGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGG  >  NC_000913/1209317‑1209885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.