New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2728679	NA (NA)	26 (0.580) +TTT	15/358	2.1	100%	noncoding (506/2904 nt)	rrlG	23S ribosomal RNA
	?	NC_000913	2728680 =	0 (0.000)					noncoding (505/2904 nt)	rrlG	23S ribosomal RNA

GTTAGTGTTACCCAACCTTCAACCTGCCCATGGCTAGATCACCGGGTTTCGGGTCTATACCCTGCAACTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCC‑GGGGTTC‑‑TTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCC‑TTGGAGGATGGTCCCCCCATA‑TTCAGACAGGAT‑ACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCA‑TTTTTGTGTAC‑GGGGCTGTCACCCTGTATCGCGCGCC‑TTTCCAGACGCTTCCACTAACACACACACTGATTCAGGCTCTGGGCTGCT‑CCCCGTTCGCTCGCCGCTACT‑GGGGGAATCTCGGTTG  >  NC_000913/2728462‑2728960                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                     tagtgttacccaaccttcaacctgcccatggctagatcaccgggtttcgggtctataccctgcaacttaacgcccagttaagactcggtttcccttcggctcccctattcggttaaccttgctacagaatataagtcgctgacccattatacaaaaggtacgcagtcacacgcctaagcgtgctcccactgcttgtacgtacacggtttcaggttcttTTTTTCACTCCCCTCGCC‑GGGGTTCT‑TTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGa                                                                                                                                                                                                                           >  1:1043885‑M2/219‑291 (MQ=255)                               ctagatcaccgggtttcgggtctataccctgcaacttaacgcccagttagactcggtttcccttcggctcccctattacggttaaccttgctacagaatataagtcgctgacccattatacaaaaggtacgcagtcacacgcctaagcgtgctcccactgcttgtacgtacacggtttcaggttcttttt                                                                                                                                                                                                                                                                                                     <  1:1227689‑M2/2‑1 (MQ=255)                                     caccgggtttcgggtctataccctgcaacttaacgcccagtttaagactcggtttcccttcggctcccctattcggttaaccttgctacagaatataagtcgctgacccattatacaaaaggtacgcagtcacacgcctaagcgtgctcccactgcttgtacgtacacggtttcaggttcttTTTTTCACTCCCCTCGCC‑GGGGTTCT‑TTTTCGCCTTTCCCTCACGGTACTTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCC‑TTGGAGGATGGTCCCCCCata‑t                                                                                                                                                                                         >  1:1152201‑M2/183‑288 (MQ=255)                                                                                             ccttcggctcccctattcggttaaccttgctacagaatataagtcgctgacccattatacaaaaggtacgcagtcacacgcctaagcgtgctcccactgcttgtacgtacacggtttcaggttcttTTTTTCACTCCCCTCGCCGGGGGTTC‑‑TTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCC‑TTGGAGGATGGTCCCCCCATACTTCAGACAGGATCACCACGTGTCCCGCCCTa                                                                                                                                                           >  1:787988‑M2/127‑262 (MQ=255)                                                                                                                 taaccttgctacagaatataagtcgctgacccattatacaaaaggtacgcagtcacacgcctaagcgtgctcccactgcttgtacgtacacggtttcaggttcttttttcactc                                                                                                                                                                                                                                                                                               >  1:1231792‑M2/107‑109 (MQ=255)                                                                                                                     cttgctacagaatataagtcgctgacccattatacaaaaggtacgcagtcacacgcctaagcgtgctcccactgcttgtacgtacacggtttcaggttcttttt                                                                                                                                                                                                                                                                                                     <  1:1164656‑M2/2‑1 (MQ=255)                                                                                                                           acagaatataagtcgctgacccattatacaaaaggtacgcagtcacacgcctaagcgtgctcccactgcttgtacgtacacggtttcaggttctttTTTTTCACTCCCCTCGCC‑GGGGTTCTTTTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCC‑TTGGAGGATGGTccc                                                                                                                                                                                                 >  1:1076083‑M2/97‑195 (MQ=255)                                                                                                                              gaatataagtcgctgacccattatacaaaaggtacgcagtcacacgcctaagcgtgctcccatctgcttgtacgtacacggtttcaggttcttTTTTTCACTCCCCTCGCC‑GGGGTTCT‑TTTTCGCCTTTccc                                                                                                                                                                                                                                                             >  1:1051037‑M2/94‑133 (MQ=255)                                                                                                                                                                       cacacgcctaagcgtgctcccactgcttgtacgtacacggtttcaggttcttTTTTTCACTCCCCTCGCC‑GGGGTTCT‑TTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTTGGAGGATGGTCCCCCCATA‑TTCAGACAGGAT‑ACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCA‑TTTTTGTGTACGGGGGCTGTCACCCTGTATCGCGCGCCTTTTCCAGACGCTTCCACTAACACACACACTGATTCAGGCTCTGGGCTGCTCCCCCGTTCGCTCGCCGCTACTGGGGGGAATCTCGGTTg  >  1:1181567‑M2/53‑339 (MQ=255)                                                                                                                                                                               taagcgtgctcccactgcttgtacgtacacggtttcaggttcttTTTTTCACTCCCCTCg                                                                                                                                                                                                                                                                                       >  1:1202191‑M2/45‑60 (MQ=255)                                                                                                                                                                                       cccactgcttgtacgtacacggtttcaggttcttttTTTTTCACTCCCCTCGCC‑GGGGTTCT‑TTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCC‑TTGGAGGATGGTCCCCCCa                                                                                                                                                                                             >  1:280744‑M2/37‑138 (MQ=255)                                                                                                                                                                                             ctgcttgtacgtacacggtttcaggttcttTTTTTCACTCCCCTCGCC‑GGGGTTCT‑TTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCC‑TTGGAGGATGGTCCCCCCATA‑TTCAGACAGGAT‑ACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTTTTGTGTAC‑GGGGCTGTCACCCTGTATCGCGCGCC‑TTTCCAGACGCTTCCACTAACACACACACTGATTCAGGCTCTGGGCTGCT‑CCCCGTtcg                               >  1:1016908‑M2/31‑285 (MQ=255)                                                                                                                                                                                              gcttgtacgtacacggtttcaggtttcttTTTTTCACTCCCCTCGCC‑GGGGTTCTTTTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGgtc                                                                                                                                                                                                                                   >  1:1032130‑M2/30‑95 (MQ=255)                                                                                                                                                                                                 tgtacgtacacggtttcaggttctttTTTTTCACTCCCCTCGCC‑GGGGTTCTTTTTTCGCCTTTCCCTCACGGTACTTGGTTCACTATCGGTCAGTCAGGa                                                                                                                                                                                                                           >  1:977788‑M2/27‑101 (MQ=255)                                                                                                                                                                                                          cacggtttcaggttcttTTTTTCACTCCCCTCGCC‑GGGGTTCTTTTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTTGGAGGATGGTCCCCCCATA‑TTCAGACAGGAT‑ACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCA‑TTTTTGTGTAC‑GGGGCTGTCACCCTGTa                                                                                                     >  1:1006557‑M2/18‑205 (MQ=255)                                                                                                                                                                                                                ttcaggttcttTTTTTCACTCCCCTCGCC‑GGGGTTCT‑TTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCC‑TTGGAGGATGGTCCCCCCATA‑TTCAGACAGGAT‑ACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCA‑tt                                                                                                                                >  1:1168589‑M2/12‑171 (MQ=255)                                                                                                                                                                                                                 tcaggttcttTTTTTCACTCCCCTCGCC‑GGGGTTCT‑TTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCC‑TTGGAGGATGGT‑CCCCCATA‑TTCAGACAGGAT‑ACCACGTGTCCCGcc                                                                                                                                                              >  1:1077661‑M2/11‑140 (MQ=255)                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                     GTTAGTGTTACCCAACCTTCAACCTGCCCATGGCTAGATCACCGGGTTTCGGGTCTATACCCTGCAACTTAACGCCCAGTTAAGACTCGGTTTCCCTTCGGCTCCCCTATTCGGTTAACCTTGCTACAGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGTGCTCCCACTGCTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCC‑GGGGTTC‑‑TTTTCGCCTTTCCCTCACGGTAC‑TGGTTCACTATCGGTCAGTCAGGAGTATTTAGCC‑TTGGAGGATGGTCCCCCCATA‑TTCAGACAGGAT‑ACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCA‑TTTTTGTGTAC‑GGGGCTGTCACCCTGTATCGCGCGCC‑TTTCCAGACGCTTCCACTAACACACACACTGATTCAGGCTCTGGGCTGCT‑CCCCGTTCGCTCGCCGCTACT‑GGGGGAATCTCGGTTG  >  NC_000913/2728462‑2728960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.