Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	284794	285103	310	16 [15]	[15] 16	yagF	CP4‑6 prophage; D‑xylonate dehydratase

GCAGACGCACCCGGACCTGCACGCCCACGAC‑‑TTTTTGCCGGACGACACCCGGCTGT‑GGGCGGCACTGCAGTCGGTGAGCGGCGGCACCTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGT‑AAAAAAGCG‑CTCGGAATTTAATTA‑TTTTAAG‑A‑GAT‑AAAACCGTCTGCGGAATA‑TTT‑CCCG‑CAGACGGCTTTGTTGTTTTTGAAATTTATTAA‑TTTAAACAATTAGTTGAGATATATCGTTGGCGTCACAAAAGCAAAATAACGTAATTCGGAAATAAGATATGACCATTGCTGGTTAATTGAATAGCTCATTACACTCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGC  >  NC_000913/285006‑285401                                                                                                      |                                                                                                                                                                                                                                                                                                                    gcAGACGCACCCGGACCTGCACGCCCACGAC‑‑‑TTTTGCCGGACGACACCCGGCTGT‑GGGCGGCACTGCAGTCGGTGAGCGGCGGCACCTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGT‑‑AAAAAGCG‑CTCGGAA‑TTAATTA‑TTTTAAG‑A‑GAT‑AAAACCGTCTGc                                                                                                                                                                                                                     >  1:374743/1‑186 (MQ=255)      cGCACCCGGACCTGCACGCCCACGACT‑TTTTTGCCGGACGACACCCGGCTGTGGGGCGGCACTGCAGTCGGTGAGCGGCGGCACCTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGT‑AAAAAAGCG‑CTCGGAATTTAATTA‑TTTTAAG‑A‑GAT‑AAAACCGTCTGCGGAATA‑TTT‑CCCG‑CAGACGGCTTTGTTG‑TTTTG‑AATTTATTAA‑tta                                                                                                                                                                 >  1:374744/1‑231 (MQ=255)            cGGACCTGCACGCCCACGAC‑‑TTTTTGCCGGACGACACCCGGCTGTGGGGCGGCACTGCAGTCGGTGAGCGGCGGCACCTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGTAAAAAAAGCG‑CTCGGAATTTAATTATTTTTAAG‑A‑GATAAAAACCGTCTGCGGAATATTTT‑CCCG‑CAg                                                                                                                                                                                                  >  1:374745/1‑199 (MQ=255)                   gCACGCCCACGACTTTTTTTGCCGGACGACACCCGGCTGT‑GGGCGGCACTGCAGTCGGTGAGCGGCGGCACCTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGT‑AAAAAAGCG‑CTCGGAATTTAATTA‑TTTTAAG‑A‑GAT‑AAAA‑CGTCTGCGGAATA‑TTT‑CCCG‑CAGACGGCTTTGTTG‑TTTTGAAATTTATTAATTTTAAACa                                                                                                                                                            >  1:374746/1‑225 (MQ=255)                   gCACGCCCACGAC‑‑TTTTTGCCGGACGACACCCGGCTGTGGGGCGGCACTGCAGTCGGTGAGCGGCGGCACCTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGT‑AAAAAAGCG‑CTCGGAA‑TTAATTA‑TTTTAAG‑A‑GAT‑AAAACCGTCTGCGGAATA‑TTT‑CCCG‑CAGACGGCTTTGTTGTTTTTGAAATTTATTAA‑TTTAAACa                                                                                                                                                            >  1:374747/1‑224 (MQ=255)                            cGAC‑‑TTTTTGCCGGACGACACCCGGCTGT‑GGGCGGCACTGCAGTCGGTGAGCGGCGGCACCTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGT‑AAAAAAGCG‑CTCGGAATTTAat                                                                                                                                                                                                                                                  >  1:1221041/1‑137 (MQ=255)                                                   ccGGCTGTGGGGCGGCACTGCAGTCGGTGAGCGGCGGCACCTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGT‑AAAAAAGCG‑CTCGGAATTTAATTA‑TTTTAAG‑A‑GAT‑AAAACC‑TCTGCGGAATA‑TTT‑CCCG‑CAGACGGCTTTGTTG‑TTTTGAAATTTATTAA‑TTTAAACAATTAGTTGAGATATATCGt                                                                                                                                         >  1:374749/1‑212 (MQ=255)                                                    cGGCTGT‑GGGCGGCACTGCAGTCGGTGAGCGGCGGCACCTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGT‑AAAAAAGCG‑Ct                                                                                                                                                                                                                                                             >  1:19363/1‑104 (MQ=255)                                                            gggCGGCACTGCAGTCGGTGAGCGGCGGCACCTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGT‑AAAAAAGCG‑CTCGGAATTTAATTA‑TTTTAAG‑ATGAT‑AAAA‑CTACTGCGGAATA‑TTT‑CCCG‑CAGACGGCTTTGTTGttt                                                                                                                                                                                   >  1:1082993/1‑164 (MQ=255)                                                            gggCGGCACTGCAGTCGGTGAGCGGCGGCACCTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGT‑AAAAAAGCG‑CTCGGAA‑TTAATTA‑TTTTAAG‑A‑GAT‑AAAA‑CGTCTGCGGAATA‑TTT‑CCCG‑CAGACGGCTTTGTTGttt                                                                                                                                                                                   >  1:374750/1‑162 (MQ=255)                                                             ggcggcACTGCAGTCGGTGAGCGGCGGCACCTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGT‑AAAAAAGCG‑CTCGGAATTTAATTA‑TTTTAAG‑A‑GAT‑AAAACCGTCTGCGGAATA‑TTT‑CCCG‑CAGACGGCTTTGTTGTTTTTGAAATTTATTAA‑TTTAAACAATTAGTTGAGATATATCGTTGGCGTCACAAAAGCAAAATAACGTAATTCGGAAATAAGATATGAcc                                                                                          <  1:19362/251‑1 (MQ=255)                                                                      gCAGTCGGTGAGCGGCGGCACCTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGT‑AAAAAAGCG‑CTCGGAATTTAATTA‑TTTTAAG‑A‑GAT‑AAAACCGTCTGCGGAATA‑TTT‑CCCG‑CAGACGGCTTTGTTG‑TTTTGAAAt                                                                                                                                                                            >  1:374752/1‑160 (MQ=255)                                                                            ggTGAGCGGCGGCACCTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGT‑AAAAAAGCG‑CTCGGAATTTAATTA‑TTTTAAG‑A‑GAT‑AAAAC‑‑TCTGCGGAATA‑TTT‑CCCG‑CAGACGGCTTTGTTG‑TTTTGAAATTTATTAA‑TTTAAACAATTAGtt                                                                                                                                                     >  1:966173/1‑174 (MQ=255)                                                                                      ggcACCTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGT‑AAAAAAGCG‑CTCGGAA‑TTAATTA‑TTTTAAG‑A‑GAT‑aaa                                                                                                                                                                                                                              >  1:374754/1‑97 (MQ=255)                                                                                        cACCTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGT‑AAAAAAGCGACTCGGAATTTAATTA‑TTTTAAGTA‑GAT‑AAAACCGTCTGCGGAATA‑TTTCCCCGACAGACGGCTTTGTTGTTTTTGAAATTTATTAA‑TTTAAACAATTAGTTGAGATATATCGTTGGCGTCACAAAAGCAAAATAACGTAATTCGG‑AATAAGATATGACCATTGCTGGTTAATTGAATAGCTCATTACACTCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGc  <  1:374753/315‑1 (MQ=255)                                                                                                      gTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGTAAAAAAAGCG‑CTCGGAATTTAATTA‑TTTTAAG‑A‑GAT‑AAAAcc                                                                                                                                                                                                                           <  1:971325/86‑1 (MQ=255)                                                                                                      |                                                                                                                                                                                                                                                                                                                    GCAGACGCACCCGGACCTGCACGCCCACGAC‑‑TTTTTGCCGGACGACACCCGGCTGT‑GGGCGGCACTGCAGTCGGTGAGCGGCGGCACCTGGAAAGGCTGTATTTATGACACCGATAAAATTATCGAGGTAATTAACGCCGGT‑AAAAAAGCG‑CTCGGAATTTAATTA‑TTTTAAG‑A‑GAT‑AAAACCGTCTGCGGAATA‑TTT‑CCCG‑CAGACGGCTTTGTTGTTTTTGAAATTTATTAA‑TTTAAACAATTAGTTGAGATATATCGTTGGCGTCACAAAAGCAAAATAACGTAATTCGGAAATAAGATATGACCATTGCTGGTTAATTGAATAGCTCATTACACTCCATTAACACGATGTTGTAATTCGGCACACTACATAAGGGTGTAATTCTGATGACGC  >  NC_000913/285006‑285401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑