New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2050717 =	14 (0.720)	3 (0.160)	3/372	NT	16.0%	coding (5780/7077 nt)	yeeJ	inverse autotransporter adhesin
	?	NC_000913	2050832 =	18 (0.950)					coding (5895/7077 nt)	yeeJ	inverse autotransporter adhesin

TATGGTGAAAGCATCCCTGCCGAATGGAGCCTCACTTGAGAAACAACTGGAGGCTATTGATGAAAAACTGACACTCACGGCGTCCAGTCCGCTTATCGGTGTCTATGCCCCTACAGGCGCTACTCTGACGGCAACGCTAACCTCTGCAAATGGCACTCCAGTGGAGGGTCAGGTCATCAACTTTAGCGTAACGCCAGAAGGGGCGACGTTAAGTGGCGGAAAAGTGAGAACTAACTCTTCAGGTCAGGCTCCAGTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGATGGCAGTGGTAACCTGATCGAAGGTCTCACTGTGTACTTC‑GCCTT‑AAAAAGCGGCTCTGCCACATTAACGTCATTAACAGCGG  >  NC_000913/2050448‑2050980                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                          tatGGGGAAAGAATCCCCTCCGAATGGTGCCTCACTGGCGAACCAACTGGAGGCTATTGATGCAAACCTGCCACTCACGGCGTCCAGTCCGCTTATCGGTGTCTATGCCCCTACAGGCGCTACTCTGACGGCAACGCTAACCTCTGCAAATGGCACTCCAGTGGAGGGTCAGGTCATCAACTTTAGCGTAACGCCAGAAGGGGCGACGTTAAGTGGCGGAAAAGTGAGAACTAACTCTTCAGGTCAGGCTCCAGTCGTTTTGACCAGCAATaa                                                                                                                                                                                                                                                                        <  2:72182/273‑1 (MQ=255)   tGGTGTAAGCCTCCCAGACGAATGGAGCCTCACTTGGGAAACAACTGGATGCTATTGATGAAAAACTGACCCTCACGGCGTCCAGTCCGCTTATCGGTGTCGATGCCCCTACAGGCGCTACGCTTACGGCAACGCTAACCTCGGCAAATGGCACTCCAGTGGAGGGTCAGGTCATCAACTTTAGCGTAACGCCAGAAGGGGCGACGTTAAGTGGCGGAAAAGTGAGAACTAACTCTTCAGGTCAGGCTCCAGTCGTTTTGACCAGCAATaa                                                                                                                                                                                                                                                                        <  1:28400/271‑1 (MQ=255)                                                            atgaAAAACTGACACTCACGGCGTCCAGTCCGCTTATCGGTGTCTATGCCCCTACAGGCGCTACTCTGACGGCAACGCTAACCTCTGCAAATGGCACTCCAGTGGAGGGTCAGGTCATCAACTTTAGCGTAACGCCAGAAGGGGCGACGTTAAGTGGCGGAAAAGTGAGAACTAACTCTTCAGGTCAGGCTCCAGTCGTTTTGACCAGCAATaa                                                                                                                                                                                                                                                                        >  1:139688/1‑214 (MQ=255)                                                                                              ttgtcgcgattccgttttgatcggtcaccgttgttaatgacgttaatgtggcagagccgctttttaaggcgaagtacacagtgagaccttctatcaggttaccacttccatcctcaaccgttgcctttaaggtacttaaatcagtgttggtggcggcgatagtcgatggatcagcgATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATATCGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGc                                                                                                                                                                           >  1:227715‑M1/177‑273 (MQ=255)                                                                                                                        cTACTCTGACGGCAACGCTAACCTCTGCAAATGGCACTCCAGTGGAGGGTCAGGTCATCAACTTTAGCGTAACGCCAGAAGGGGCGACGTTAAGTGGCGGAAAAGTGAGAACTAACTCTTCAGGTCAGGCTCCAGTCGTTTTGACCAGCAATAAAGTCGGt                                                                                                                                                                                                                                                                 <  2:67459/161‑1 (MQ=255)                                                                                                                        cTACTCTGACGGCAACGCTAACCTCTGCAAATGGCACTCCAGTGGAGGGTCAGGTCATCAACTTTAGCGTAACGCCAGAAGGGGCGACGTTAAGTGGCGGAAAAGTGAGAACTAACTCTTCAGGTCAGGCTCCAGTCGTTTTGACCAGCAATAAAGTCGGt                                                                                                                                                                                                                                                                 >  1:67459/1‑161 (MQ=255)                                                                                                                                                      aTGGCACTCCAGTGGAGGGTCAGGTCATCAACTTTAGCGTAACGCCAGAAGGGGCGACGTTAAGTGGCGGAAAAGTGAGAACTAACTCTTCAGGTCAGGCTCCAGTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCCTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGAtt                                                                                                                   <  1:165096/273‑1 (MQ=255)                                                                                                                                                           aCTCCAGTGGAGGGTCAGGTCATCAACTTTAGCGTAACGCCAGAAGGGGCGACGTTAAGTGGCGGAAAAGTGAGAACTAACTCTTCAGGTCAGGCTCCAGTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAacacctgtctctta                                                                                                              >  1:177991/1‑263 (MQ=255)                                                                                                                                                                                                  ccAGAAGGGGCGACGTTAAGTGGCGGAAAAGTGAGAACTAACTCTTCAGGTCAGGCTCCAGTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACaa                                                                                                                                                                                                                         >  1:151603/1‑127 (MQ=255)                                                                                                                                                                                                  ccAGAAGGGGCGACGTTAAGTGGCGGAAAAGTGAGAACTAACTCTTCAGGTCAGGCTCCAGTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACaa                                                                                                                                                                                                                         <  2:151603/127‑1 (MQ=255)                                                                                                                                                                                                    aGAAGGGGGAACGTTAAGGGGCGGAAAAGTGAGAACTATCTCTTCAGGTAAGGCTCCATTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCGTTCCAAAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCTACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGATGGCAGTGGTAACCTGAt                                                                     <  1:57569/273‑1 (MQ=255)                                                                                                                                                                                                            tcctcaaccgttgcctttaaggtacttaaatcagtgttggtggcggcgatagtcgatggatcagcgATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCg                                                                                                                                                                            <  1:225516‑M1/96‑1 (MQ=255)                                                                                                                                                                                                            tcctcaaccgttgcctttaaggtacttaaatcagtgttggtggcggcgatagtcgatggatcagcgATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCg                                                                                                                                                                            >  2:225516‑M1/67‑162 (MQ=255)                                                                                                                                                                                                             gACGTTAAGTGGCGGAAAAGTGAGAACTAACTCTTCAGGTCAGGCTCCAGTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGACAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGTATGGCAGTGGTAACCTGATCGAAGGtc                                                             >  1:213790/1‑272 (MQ=255)                                                                                                                                                                                                                                                   gtcaggCTCCAGTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGATGGCAGTGGTAACCTGATCGAAGGTCTCACTGTGTACTTC‑GCCTT‑AAAAAg                                  <  1:288366/259‑1 (MQ=255)                                                                                                                                                                                                                                                   gtcaggCTCCAGTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGATGGCAGTGGGAACCCGACCGCAGGTCCAACTGT‑TGCATCTGCCTTAAAAAAGCGGcccgcccaaa                     >  2:288366/1‑264 (MQ=255)                                                                                                                                                                                                                                                           ccAGTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACt                                                                                                                                                                                            >  1:69802/1‑99 (MQ=255)                                                                                                                                                                                                                                                           ccAGTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACt                                                                                                                                                                                            <  2:69802/99‑1 (MQ=255)                                                                                                                                                                                                                                                           ccAGTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGACACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGCCTATCACCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGATGGCAGGGGTAACCTGATCGAAGGTCTCACTTGGTACTTC‑GCCTT‑AAAAAGCGGCCCTGCCACATTAACGTc             >  1:157097/1‑272 (MQ=255)                                                                                                                                                                                                                                                                     taacaagaaaTAAAGCCGGTACATATACGGTACCTGCATCTTTCCATAACGGCTTAAAAATACAGACAAAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGATGGCAGTGGTAACCTGATCGAAGGTCTCACTGTGTACTTC‑GCCTT‑AAAAAGCGGCTCTGCCACAtt                   <  1:201249/248‑1 (MQ=255)                                                                                                                                                                                                                                                                     tGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGATGGCAGTGGTAACCTGATCGAAGGTCTCACTGTGTACTTC‑GCCTT‑AAAAAGCGGGCCTGCAACATTAACGTTCTTaaaaatcg  >  2:201249/1‑267 (MQ=255)                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                          TATGGTGAAAGCATCCCTGCCGAATGGAGCCTCACTTGAGAAACAACTGGAGGCTATTGATGAAAAACTGACACTCACGGCGTCCAGTCCGCTTATCGGTGTCTATGCCCCTACAGGCGCTACTCTGACGGCAACGCTAACCTCTGCAAATGGCACTCCAGTGGAGGGTCAGGTCATCAACTTTAGCGTAACGCCAGAAGGGGCGACGTTAAGTGGCGGAAAAGTGAGAACTAACTCTTCAGGTCAGGCTCCAGTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGATGGCAGTGGTAACCTGATCGAAGGTCTCACTGTGTACTTC‑GCCTT‑AAAAAGCGGCTCTGCCACATTAACGTCATTAACAGCGG  >  NC_000913/2050448‑2050980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.