New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2050717 =	14 (0.720)	3 (0.160)	3/372	NT	16.0%	coding (5780/7077 nt)	yeeJ	inverse autotransporter adhesin
	?	NC_000913	2050832 =	18 (0.950)					coding (5895/7077 nt)	yeeJ	inverse autotransporter adhesin

ATGGCACTCCAGTGGAGGGTCAGGTCATCAACTTTAGCGTAACGCCAGAAGGGGCGACGTTAAGTGGCGGAAAAGTGAGAACTAACTCTTCAGGTCAGGCTCCAGTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGATGGCAGTGGTAACCTGATCGAAGGTCTCACTGTGTACTTC‑GCCTT‑AAAAAGCGGCTCTGCCACATTAACGTCATTAACAGCGGTGACCGATCAAAACGGAATCGCGACAACAAGCGTGAAAGGAGCGATGACAGGTAGCGTCAC  >  NC_000913/2050597‑2051041                                                                                                                                                                                                                                            |                                                                                                                                                                                                                    aTGGCACTCCAGTGGAGGGTCAGGTCATCAACTTTAGCGTAACGCCAGAAGGGGCGACGTTAAGTGGCGGAAAAGTGAGAACTAACTCTTCAGGTCAGGCTCCAGTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCCTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGAtt                                                                                                                                                                                <  1:165096/273‑1 (MQ=255)      aCTCCAGTGGAGGGTCAGGTCATCAACTTTAGCGTAACGCCAGAAGGGGCGACGTTAAGTGGCGGAAAAGTGAGAACTAACTCTTCAGGTCAGGCTCCAGTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAacacctgtctctta                                                                                                                                                                           >  1:177991/1‑263 (MQ=255)                                               aGAAGGGGGAACGTTAAGGGGCGGAAAAGTGAGAACTATCTCTTCAGGTAAGGCTCCATTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCGTTCCAAAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCTACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGATGGCAGTGGTAACCTGAt                                                                                                                                  <  1:57569/273‑1 (MQ=255)                                                        gACGTTAAGTGGCGGAAAAGTGAGAACTAACTCTTCAGGTCAGGCTCCAGTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGACAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGTATGGCAGTGGTAACCTGATCGAAGGtc                                                                                                                          >  1:213790/1‑272 (MQ=255)                                                                                              gtcaggCTCCAGTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGATGGCAGTGGTAACCTGATCGAAGGTCTCACTGTGTACTTC‑GCCTT‑AAAAAg                                                                                               <  1:288366/259‑1 (MQ=255)                                                                                              gtcaggCTCCAGTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGATGGCAGTGGGAACCCGACCGCAGGTCCAACTGT‑TGCATCTGCCTTAAAAAAGCGGcccgcccaaa                                                                                  >  2:288366/1‑264 (MQ=255)                                                                                                      ccAGTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGACACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGCCTATCACCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGATGGCAGGGGTAACCTGATCGAAGGTCTCACTTGGTACTTC‑GCCTT‑AAAAAGCGGCCCTGCCACATTAACGTc                                                                          >  1:157097/1‑272 (MQ=255)                                                                                                                taacaagaaaTAAAGCCGGTACATATACGGTACCTGCATCTTTCCATAACGGCTTAAAAATACAGACAAAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGATGGCAGTGGTAACCTGATCGAAGGTCTCACTGTGTACTTC‑GCCTT‑AAAAAGCGGCTCTGCCACAtt                                                                                <  1:201249/248‑1 (MQ=255)                                                                                                                tGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGATGGCAGTGGTAACCTGATCGAAGGTCTCACTGTGTACTTC‑GCCTT‑AAAAAGCGGGCCTGCAACATTAACGTTCTTaaaaatcg                                                               >  2:201249/1‑267 (MQ=255)                                                                                                                                    aCATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAggt                                                                                                                                                    >  2:273440/1‑169 (MQ=255)                                                                                                                                    aCATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGa                                                                                                                                                    <  1:273440/170‑1 (MQ=255)                                                                                                                                           gcggtgcttgagttgccagtgactttcacggttgtctgtgtctgtattgttacgccgatatggaaagatgcagtcaccgtatatgtaccgactttatCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGATGGAAGTGGTAACCTGATAGAAGGTCTCACTGTGTACTTC‑GCCTT‑AAAAAGCGGCTCTGCCACATTAACGTCATTAACAACGGTGACCGATCAAAACGGAATCGCGacaa                                    >  1:227715‑M2/98‑273 (MQ=255)                                                                                                                                            cggtgcttgagttgccagtgactttcacggttgtctgtgtctgtattgttacgccgttatggaaagatgcagtcaccgtatatgtaccgactttatCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGa                                                                                                                                                    <  1:225516‑M2/66‑1 (MQ=255)                                                                                                                                            cggtgcttgagttgccagtgactttcacggttgtctgtgtctgtattgttacgccgttatggaaagatgcagtcaccgtatatgtaccgactttatCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGa                                                                                                                                                    >  2:225516‑M2/97‑162 (MQ=255)                                                                                                                                                   gCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGccacca                                                                                                                                                                                         <  1:279668/118‑1 (MQ=255)                                                                                                                                                   gCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGccacca                                                                                                                                                                                         >  2:279668/1‑118 (MQ=255)                                                                                                                                                                  ggCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGATGGCAGTGGTAACCTGATCGAAGGTCTCACTGTGTACTTC‑GCCTT‑AAAAAg                                                                                               >  1:119236/1‑191 (MQ=255)                                                                                                                                                                       aaCAATACAGACACAGACAACCGTGAAAGTCACTGCCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGCTCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTAAAAGGCAACGGTTGAGGATGGCAGTGGTATCCTGATCGAAGGTCTCACTGTGTACTTC‑GCCTT‑AAAAAGCGGCTCTGCCACATTAACGTCATTAACAGCGGTGACCGATCAAAACGGAATCGCGACAACAAGCGTGAAAGGAGCGATGACAGGTAg        <  1:273860/273‑1 (MQ=255)                                                                                                                                                                             acagacacagacAACAGTGAAAGTACCTGGCAACACAAGACCCGCCCTTGTTGCTAGCTTTATCGCTTTTCCAACGACTTTCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGGTGAGGATGGCAGTGGTAACCTGATCGAAGGTCTCACTGTGTACTTC‑GCCTT‑AAAAAGCGGCTCTGCCACATTAACGTCATTAACAGCGGTGACCGATCAAAACGGAATCGCGACAACAAGCGTGAAAGGAGCGATGACAGGTAGCGTCAc  <  1:59277/273‑1 (MQ=255)                                                                                                                                                                                         aaCCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACg                                                                                                                                                            <  1:243345/109‑1 (MQ=255)                                                                                                                                                                                         aaCCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACg                                                                                                                                                            >  2:243345/1‑109 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                    ATGGCACTCCAGTGGAGGGTCAGGTCATCAACTTTAGCGTAACGCCAGAAGGGGCGACGTTAAGTGGCGGAAAAGTGAGAACTAACTCTTCAGGTCAGGCTCCAGTCGTTTTGACCAGCAATAAAGTCGGTACATATACGGTGACTGCATCTTTCCATAACGGCGTAACAATACAGACACAGACAACCGTGAAAGTCACTGGCAACTCAAGCACCGCCCATGTTGCTAGCTTTATCGCTGATCCATCGACTATCGCCGCCACCAACACTGATTTAAGTACCTTAAAGGCAACGGTTGAGGATGGCAGTGGTAACCTGATCGAAGGTCTCACTGTGTACTTC‑GCCTT‑AAAAAGCGGCTCTGCCACATTAACGTCATTAACAGCGGTGACCGATCAAAACGGAATCGCGACAACAAGCGTGAAAGGAGCGATGACAGGTAGCGTCAC  >  NC_000913/2050597‑2051041

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.