| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 291401 | NA (NA) | 57 (1.270) | 27/134 | 0.1 | 53.3% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 873161 = | 50 (1.110) | coding (183/2349 nt) | pdeI | putative c‑di‑GMP phosphodiesterase PdeI | |||||
ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/291336‑291401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGAT > NC_000913/873161‑873220 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTG > 1:1515986/1‑68ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTG > 1:1470373/1‑68ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTG > 1:2274550/1‑68 aAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAC < 1:3273372/67‑1 AGCCACTGGAGCACCTCAAAAATACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGT < 1:2130476/68‑1 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGT > 1:2981264/1‑68 CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTC > 1:2285955/1‑68 CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGC > 1:1311569/1‑68 CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGC > 1:1648190/1‑68 CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGC < 1:126715/68‑1 CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGC < 1:3568524/68‑1 CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGC < 1:1145320/68‑1 CTGGAGCACCTCAAAAACACCATCATACACGAAATCAGTAAGTGGGCAGCATCACCTGAACGTTCGGC < 1:2846470/68‑1 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCC > 1:2013768/1‑68 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCC > 1:453454/1‑68 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTG > 1:892807/1‑68 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTG > 1:2379981/1‑68 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTG > 1:3235897/1‑68 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTG > 1:1139950/1‑68 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGA > 1:853044/1‑68 actTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACA < 1:3010522/65‑1 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACA > 1:846076/1‑68 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACA < 1:182506/68‑1 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACA < 1:2687212/68‑1 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACA > 1:2350681/1‑68 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACA > 1:2477858/1‑68 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATT > 1:138530/1‑68 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATT > 1:352589/1‑68 CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACT < 1:3016955/68‑1 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCA < 1:1423894/68‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGT < 1:644770/68‑1 ACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATT > 1:1548031/1‑68 ACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATT > 1:3159262/1‑68 ACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATT > 1:3241452/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTA > 1:115144/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTA > 1:1149478/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTA > 1:1134146/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTA > 1:1628851/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTA > 1:2732853/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTA > 1:2636875/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTCCGGCCCTGACATTAAAGGACTCACTGTATTTA > 1:2283922/1‑68 ATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAA > 1:1320138/1‑68 TCAGTAGGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTGAAA > 1:2609759/1‑68 TCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAA < 1:1537968/68‑1 TCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAA > 1:1577727/1‑68 TCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAA < 1:1475993/68‑1 AGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACA > 1:649424/1‑68 AGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACA > 1:1247454/1‑68 TTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGA > 1:1206823/1‑68 TGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAG < 1:733375/68‑1 GGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGG > 1:2931344/1‑68 AGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGA < 1:1339999/68‑1 AGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGA < 1:853265/68‑1 AGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGA < 1:1298909/68‑1 GCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGAT < 1:2601851/68‑1 GCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGAT > 1:139185/1‑68 GCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGAT < 1:70766/68‑1 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/291336‑291401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGAT > NC_000913/873161‑873220 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |