| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 291401 | NA (NA) | 57 (1.270) | 27/134 | 0.1 | 53.3% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 873161 = | 50 (1.110) | coding (183/2349 nt) | pdeI | putative c‑di‑GMP phosphodiesterase PdeI | |||||
Only 100 of 108 total aligned reads displayed.
GGTAAAACGTGCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGATTCAACGCG > NC_000913/873095‑873228 | acagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTg > 1:2274550‑M2/67‑68 (MQ=255)acagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTg > 1:1515986‑M2/67‑68 (MQ=255)acagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTg > 1:1470373‑M2/67‑68 (MQ=255) aaaaCGTGCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAAc < 1:2075229/68‑1 (MQ=255) aaaaCGTGCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATCGAAc < 1:2266627/68‑1 (MQ=255) agccactggagcacctcaaaaataccatcatacactaaatcagtaagttggcagcatcaccTGAACGt < 1:2130476‑M2/7‑1 (MQ=255) agccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGt > 1:2981264‑M2/62‑68 (MQ=255) aCGTGCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGtt > 1:663149/1‑68 (MQ=255) aCGTGCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGtt > 1:514961/1‑68 (MQ=255) aCGTGCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGtt > 1:2435119/1‑68 (MQ=255) aCGTGCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGtt > 1:390613/1‑68 (MQ=255) aCGTGCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGtt > 1:1454042/1‑68 (MQ=255) aCGTGCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAACATATTGAACGtt > 1:3124373/1‑68 (MQ=255) ccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTc > 1:2285955‑M2/60‑68 (MQ=255) gTGCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCg > 1:1070227/1‑68 (MQ=255) gCCGATAGGCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGc < 1:2613018/68‑1 (MQ=255) gCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGc < 1:3407148/68‑1 (MQ=255) gCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGc < 1:1850828/68‑1 (MQ=255) ctggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGc > 1:1311569‑M2/57‑68 (MQ=255) ctggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGc > 1:1648190‑M2/57‑68 (MQ=255) ctggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGc < 1:1145320‑M2/12‑1 (MQ=255) ctggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGc < 1:3568524‑M2/12‑1 (MQ=255) ctggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGc < 1:126715‑M2/12‑1 (MQ=255) ctggagcacctcaaaaacaccatcatacacgaaatcagtaagtgggcagcatcaccTGAACGTTCGGc < 1:2846470‑M2/12‑1 (MQ=255) ggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGccc > 1:453454‑M2/55‑68 (MQ=255) ggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGccc > 1:2013768‑M2/55‑68 (MQ=255) agcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTg > 1:2379981‑M2/53‑68 (MQ=255) agcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTg > 1:892807‑M2/53‑68 (MQ=255) agcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTg > 1:1139950‑M2/53‑68 (MQ=255) agcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTg > 1:3235897‑M2/53‑68 (MQ=255) gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGa > 1:853044‑M2/52‑68 (MQ=255) aGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGAc < 1:1622953/68‑1 (MQ=255) aGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGAc < 1:113746/68‑1 (MQ=255) gCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACa > 1:2126819/1‑68 (MQ=255) gCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACa < 1:909546/68‑1 (MQ=255) gCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACa < 1:1358248/68‑1 (MQ=255) acttcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACa < 1:3010522‑M2/19‑1 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACa < 1:182506‑M2/19‑1 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACa < 1:2687212‑M2/19‑1 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACa > 1:846076‑M2/50‑68 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACa > 1:2477858‑M2/50‑68 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACa > 1:2350681‑M2/50‑68 (MQ=255) ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACAtt > 1:138530‑M2/48‑68 (MQ=255) ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACAtt > 1:352589‑M2/48‑68 (MQ=255) gAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGa < 1:3039148/68‑1 (MQ=255) gAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGa < 1:407504/68‑1 (MQ=255) aaCTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGAc < 1:1514350/68‑1 (MQ=255) caccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACt < 1:3016955‑M2/29‑1 (MQ=255) aCTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACt > 1:1926593/1‑68 (MQ=255) aCTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACt > 1:2240852/1‑68 (MQ=255) aCTTATTCAGAAAAACGTNGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACt > 1:2715703/1‑68 (MQ=255) cTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTc > 1:699159/1‑68 (MQ=255) cTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTc < 1:1873219/68‑1 (MQ=255) ttATTCAGAAAAACGTTGGCTATTTCTTTAAAGATGTTGAACGTTCGGCCCTGACATTAAAGGACTCa < 1:386104/68‑1 (MQ=255) ttATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCa < 1:3053265/68‑1 (MQ=255) ccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCa < 1:1423894‑M2/31‑1 (MQ=255) tATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCAc < 1:397356/68‑1 (MQ=255) tCAGAGGAACGTTGGGTGGTGCTCGAAAGAGATGGAAGGTGCGGCCCTGACATTAAAGGACTCACTGt < 1:230451/68‑1 (MQ=255) acactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtatt > 1:3241452‑M2/31‑68 (MQ=255) acactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtatt > 1:3159262‑M2/31‑68 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtattta > 1:115144‑M2/29‑68 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtattta > 1:1149478‑M2/29‑68 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtattta > 1:1134146‑M2/29‑68 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtattta > 1:1628851‑M2/29‑68 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtattta > 1:2636875‑M2/29‑68 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtattta > 1:2732853‑M2/29‑68 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTCCGGCCCTGACATTAAAGGACTCACTGtattta > 1:2283922‑M2/29‑68 (MQ=255) aaaaCGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtattta > 1:3284134/1‑68 (MQ=255) aaaCGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtatttat > 1:1979352/1‑68 (MQ=255) aCGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATttatta > 1:2984606/1‑68 (MQ=255) tcagtaggttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTgaaa > 1:2609759‑M2/23‑68 (MQ=255) tcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTaaaa < 1:1475993‑M2/46‑1 (MQ=255) tcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTaaaa < 1:1537968‑M2/46‑1 (MQ=255) tcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTaaaa > 1:1577727‑M2/23‑68 (MQ=255) gCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAAt < 1:2624835/68‑1 (MQ=255) gCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAAt < 1:539639/68‑1 (MQ=255) agttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACa > 1:1247454‑M2/17‑68 (MQ=255) agttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACa > 1:649424‑M2/17‑68 (MQ=255) ttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACaga > 1:1206823‑M2/15‑68 (MQ=255) ttCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACaga < 1:136323/68‑1 (MQ=255) tggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACagag < 1:733375‑M2/55‑1 (MQ=255) tCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACagag > 1:726668/1‑68 (MQ=255) tCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACagag < 1:1809831/68‑1 (MQ=255) tCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACagag > 1:1159854/1‑68 (MQ=255) tCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACagag > 1:301605/1‑68 (MQ=255) ggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAgagg > 1:2931344‑M2/13‑68 (MQ=255) tAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGgaga < 1:2628041/68‑1 (MQ=255) tAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGgaga < 1:3349131/68‑1 (MQ=255) tAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGgaga < 1:2740421/68‑1 (MQ=255) agcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGgaga < 1:853265‑M2/59‑1 (MQ=255) agcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGgaga < 1:1298909‑M2/59‑1 (MQ=255) agcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGgaga < 1:1339999‑M2/59‑1 (MQ=255) gcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGAt < 1:70766‑M2/60‑1 (MQ=255) gcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGAt < 1:2601851‑M2/60‑1 (MQ=255) gcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGAt > 1:139185‑M2/9‑68 (MQ=255) aaaGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGAt < 1:160977/68‑1 (MQ=255) aaaGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGAt < 1:897550/68‑1 (MQ=255) aGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGATTc > 1:1723647/1‑68 (MQ=255) ttGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGATTCAAcgc < 1:532352/68‑1 (MQ=255) tGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGATTCAAcgcg < 1:1750901/68‑1 (MQ=255) | GGTAAAACGTGCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGATTCAACGCG > NC_000913/873095‑873228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |