New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1720809 =	50 (1.130)	19 (0.430)	15/132	0.7	27.5%	coding (16/435 nt)	slyA	DNA‑binding transcriptional dual regulator SlyA
	?	NC_000913	2101749 =	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region

CTAAAAGCCGCATAATATCTTAGCAAGCTAATTATAAGGAGATGAAATTGGAATCGCCACTAGg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1720871‑1720809 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGC  >  NC_000913/2101749‑2101816                                                                                                                                     CTAAAAGCCGCATAATATCTTAGCAAGCTAATTATAAGGAGATGAAATTGGAATCGCCACTAGGGAAG                                                                 >  1:1862168/1‑68   AAAAGCCGCATAATATCTTAGCAAGCTAATTATAAGGAGATGAAATTGGAATCGCCACTAGGGAAGGT                                                               <  1:283775/68‑1   AAAAGCCGCATAATATCTTAGCAAGCTAATTATAAGGAGATGAAATTGGAATCGCCACTAGGGAAGGT                                                               >  1:2484521/1‑68     AAGCCGCATAATATCTTAGCAAGCTAATTATAAGGAGATGAAATTGGAATCGCCACTAGGGAAGGTGC                                                             >  1:817187/1‑68                TATCTTAGCAAGCTAATTATAAGGAGATGAAATTGGAATCGCCACTAGGGAAGGTGCGAATAAGCGGG                                                  <  1:659906/68‑1                  TCTTAGCAAGCTAATTATAAGGAGATGAAATTGGAATCGCCACTAGGGAAGGTGCGAATAAGCGGGGA                                                >  1:2042536/1‑68                      AGCAAGCTAATTATAAGGAGATGAAATTGGAATCGCCACTAGGGAAGGTGCGAATAAGCGGGGAAATT                                            >  1:1497937/1‑68                        CAAGCTAATTATAAGGAGATGAAATTGGAATCGCCACTAGGGAAGGTGCGAATAAGCGGGGAAATTCT                                          <  1:1168975/68‑1                        CAAGCTAATTATAAGGAGATGAAATTGGAATCGCCACTAGGGAAGGTGCGAATAAGCGGGGAAATTCT                                          >  1:2332279/1‑68                                     AGGAGATGAAATTGGAATCGCCACTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTC                             >  1:471841/1‑68                                       GAGATGAAATTGGAATCGCCACTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAG                           <  1:1887976/68‑1                                         GATGAAATTGGAATCGCCACTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTC                         <  1:46186/68‑1                                                TTGGAATCGCCACTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT                  >  1:107735/1‑68                                                    AATCGCCACTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCT              <  1:88668/68‑1                                                      TCGCCACTAGGGAAGGTGCGAATAAGCGGGGAAATCCTTCTCGGCTGACTCAGTCATTTCATTTCTTC            >  1:1461644/1‑68                                                             TAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTG     >  1:1539959/1‑68                                                              AGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCATTCATTTCATTTCTTCATGTTTGA    >  1:317043/1‑68                                                              AGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGA    >  1:1538107/1‑68                                                              AGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGA    >  1:1363845/1‑68                                                                GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTTTTCATGTTTGAGC  >  1:2852728/1‑68                                                                GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGC  >  1:1054741/1‑68                                                                GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGC  >  1:1216465/1‑68                                                                GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGC  >  1:586208/1‑68                                                                GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGC  >  1:573381/1‑68                                                                GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGC  >  1:497108/1‑68                                                                GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGC  >  1:1358186/1‑68                                                                GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGC  >  1:2576249/1‑68                                                                GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGC  >  1:1739397/1‑68                                                                GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGC  >  1:2023616/1‑68                                                                GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGC  >  1:1746101/1‑68                                                                GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGGCATTTCATTTCTTCATGTTTGAGC  >  1:225097/1‑68                                                                GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAATCATTTCATTTCTTCATGTTTGAGC  >  1:1101998/1‑68                                                                GGAAGGAGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGC  >  1:1859297/1‑68                                                                                                                                     CTAAAAGCCGCATAATATCTTAGCAAGCTAATTATAAGGAGATGAAATTGGAATCGCCACTAGg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1720871‑1720809 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGC  >  NC_000913/2101749‑2101816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.