| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1720809 = | 50 (1.130) | 19 (0.430) | 15/132 | 0.7 | 27.5% | coding (16/435 nt) | slyA | DNA‑binding transcriptional dual regulator SlyA |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
CCAGCGGTTTCAGGCGATGGTCTATCAGAGCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTAGAATAG > NC_000913/1720743‑1720876 | tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt > 1:1538107‑M1/67‑68 (MQ=255)tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt > 1:1363845‑M1/67‑68 (MQ=255)tcaaacatgaagaaatgaaatgaatgagtcagccgagaagaatttccccgcttattcgcaccttccCt > 1:317043‑M1/67‑68 (MQ=255)ccAGCGGTTTCAGGCGATGGTCTATCAGAGCACGCCATATGCGCATCAACCGTGCCAGATCAGAACCt < 1:2411098/68‑1 (MQ=255)ccAGCGGTTTCAGGCGATGGTCTATCAGAGCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCt < 1:904086/68‑1 (MQ=255)ccAGCGGTTTCAGGCGATGGTCTATCAGAGCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCt < 1:625800/68‑1 (MQ=255)ccAGCGGTTTCAGGCGATGGTCTATCAGAGCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCt > 1:1683351/1‑68 (MQ=255) caaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa > 1:1539959‑M1/66‑68 (MQ=255) gCGGTTTCAGGCGATGGTCTATCAGAGCACGCCATATGCGCACCAACCGTGCCAGATCAGANTCTAGg > 1:2114657‑M2/1‑67 (MQ=255) gaagaaatgaaatgactgagtcagccgagaaggatttccccgcttattcgcaccttccCTAGTGGCGa > 1:1461644‑M1/59‑68 (MQ=255) agaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGTGGCGAtt < 1:88668‑M1/12‑1 (MQ=255) gCGATGGTCTATCAGAGCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCTAGggaaggtgcga < 1:2496118‑M2/68‑12 (MQ=255) gCGATGGTCTATCAGAGCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCTAGggaaggtgcga < 1:485350‑M2/68‑12 (MQ=255) atgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGTGGCGATTCCaa > 1:107735‑M1/53‑68 (MQ=255) gTCTATCAGAGCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCa > 1:2150034/1‑68 (MQ=255) gTCTATCAGAGCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCa > 1:3066208/1‑68 (MQ=255) gactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGTGGCGATTCCAATTTCAtc < 1:46186‑M1/23‑1 (MQ=255) tATCAGAGCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCTAGggaaggtgcgaacaagtccc > 1:2424913‑M2/1‑48 (MQ=255) tATCAGAGCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCTAGggaaggtgcgaacaagtccc > 1:1297695‑M2/1‑48 (MQ=255) ctgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGTGGCGATTCCAATTTCAtctc < 1:1887976‑M1/25‑1 (MQ=255) tCAGAGCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTcc > 1:136596/1‑68 (MQ=255) tCAGAGCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTcc < 1:1322437/68‑1 (MQ=255) tCAGAGCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTcc > 1:864399/1‑68 (MQ=255) tCAGAGCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTcc < 1:1119386/68‑1 (MQ=255) gagtcagccgagaagaatttccccgcttattcgcaccttccCTAGTGGCGATTCCAATTTCATCTCCt > 1:471841‑M1/42‑68 (MQ=255) cAGAGCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCt > 1:478953/1‑68 (MQ=255) cAGAGCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCt < 1:986508/68‑1 (MQ=255) cAGAGCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCt < 1:945440/68‑1 (MQ=255) agagCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCTAGggaaggtgcgaacaagtccctgat < 1:2052576‑M2/68‑25 (MQ=255) agagCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCtt > 1:2217740/1‑68 (MQ=255) agagCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCtt > 1:2447153/1‑68 (MQ=255) ccATATGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAg > 1:3118435/1‑68 (MQ=255) agaatttccccgcttattcgcaccttccCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTg < 1:1168975‑M1/40‑1 (MQ=255) agaatttccccgcttattcgcaccttccCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTg > 1:2332279‑M1/29‑68 (MQ=255) tGCGCACCAACCGTGCCAGATCAGAACCTAGggaaggtgcgaacaagtccctgatatgagatcatgtt < 1:573558‑M2/68‑38 (MQ=255) tGCGCACCAACCGTGCCAGATCAGAACCTAGggaaggtgcgaacaagtccctgatatgagatcatgtt < 1:1232645‑M2/68‑38 (MQ=255) tGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATATTTAGCTTGc > 1:864526/1‑68 (MQ=255) tGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGc > 1:2574574/1‑68 (MQ=255) tGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGc > 1:399559/1‑68 (MQ=255) tGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGc > 1:2454571/1‑68 (MQ=255) tGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGc > 1:2145036/1‑68 (MQ=255) tGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGc > 1:1718432/1‑68 (MQ=255) tGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGc > 1:1896565/1‑68 (MQ=255) tGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGc > 1:2120094/1‑68 (MQ=255) tGCGCACCAACCATGCCAGATCAGAACCTAGggaaggtgcgaacaagtccctgatatgagatcatgtt < 1:2185755‑M2/68‑38 (MQ=255) gcgcACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCt < 1:514711/68‑1 (MQ=255) gcgcACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCt < 1:1306974/68‑1 (MQ=255) aatttccccgcttattcgcaccttccCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCt > 1:1497937‑M1/27‑68 (MQ=255) cgcACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTa > 1:2895795/1‑68 (MQ=255) cgcACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTa > 1:3542889/1‑68 (MQ=255) tccccgcttattcgcaccttccCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGa > 1:2042536‑M1/23‑68 (MQ=255) aCCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGa < 1:936772/68‑1 (MQ=255) aCCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGa < 1:3392306/68‑1 (MQ=255) aCCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTAATCTCCTTATAATTAGCTTGCTAAGa > 1:1067615/1‑68 (MQ=255) ccAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGat > 1:1224295/1‑68 (MQ=255) cccgcttattcgcaccttccCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGata < 1:659906‑M1/48‑1 (MQ=255) aCCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGAtatt > 1:3198504/1‑68 (MQ=255) cGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGAtattat > 1:2898027/1‑68 (MQ=255) cGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGAtattat > 1:57988/1‑68 (MQ=255) ccAGATCAGAACCTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagtca < 1:3149428‑M2/68‑53 (MQ=255) ccAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCgg > 1:386657/1‑68 (MQ=255) ccAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCgc > 1:2404556/1‑67 (MQ=255) cAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGc < 1:1731692/68‑1 (MQ=255) gcaccttccCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCtt > 1:817187‑M1/10‑68 (MQ=255) gATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCtt < 1:3206637/68‑1 (MQ=255) tCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCtttt > 1:2968522/1‑68 (MQ=255) tCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCtttt > 1:2761301/1‑68 (MQ=255) tCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCtttt < 1:594792/68‑1 (MQ=255) accttccCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCtttt < 1:283775‑M1/61‑1 (MQ=255) accttccCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCtttt > 1:2484521‑M1/8‑68 (MQ=255) cttccCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTAg > 1:1862168‑M1/6‑68 (MQ=255) gAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTAGa < 1:1929593/68‑1 (MQ=255) aCCTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg < 1:1079470‑M2/68‑63 (MQ=255) aCCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTCTGCGGCTTTTAGAAt > 1:1021654/1‑68 (MQ=255) aCCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTAGAAt > 1:1307883/1‑68 (MQ=255) aCCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTAGAAt > 1:1941880/1‑68 (MQ=255) aCCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTAGAAt > 1:847929/1‑68 (MQ=255) aCCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTAGAAt > 1:1182537/1‑68 (MQ=255) aCCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTAGAAt > 1:1161330/1‑68 (MQ=255) aCCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTAGAAt > 1:926204/1‑68 (MQ=255) ccTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt > 1:2447400‑M2/1‑5 (MQ=255) cTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTAGAAtct > 1:3029639/1‑66 (MQ=255) cTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTAGAATAg > 1:841387/1‑68 (MQ=255) cTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTAGAATAg > 1:2756355/1‑68 (MQ=255) | CCAGCGGTTTCAGGCGATGGTCTATCAGAGCACGCCATATGCGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTAGAATAG > NC_000913/1720743‑1720876 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |