| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1720894 = | 20 (0.440) | 34 (0.750) | 21/134 | 0.4 | 63.0% | intergenic (‑70/‑131) | slyA/ydhI | DNA‑binding transcriptional dual regulator SlyA/DUF1656 domain‑containing protein YdhI |
| ? | NC_000913 | = 1979270 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
GCGCAATTTCTGAAAAATATGTCTGACGGTAACCAAATGCAGCAATACATTTGTTTTAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1720953‑1720894‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTT < NC_000913/1979270‑1979204 GCGCAATTTCTGAAAAATATGTCTGACGGTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGC < 1:1737577/68‑1GCGCAATTTCTGAAAAATATGTCTGACGGTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGC < 1:1848864/68‑1GCGCAATTTCTGAAAAATATGTCTGACGGTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGC < 1:295800/68‑1 CGCAATTTCTGAAAAATATGTCTGACGGTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGCT < 1:51024/68‑1 TCTGAAAAATATGTCTGACGGTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACT < 1:3450211/68‑1 AAAAATATGTCTGACGGTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACT < 1:692299/68‑1 AAAAATATGTCTGACGGTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACT < 1:3298476/68‑1 AAATATGTCTGACGGTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGA < 1:2604205/68‑1 AAATATGTCTGACGGTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGA < 1:2297030/68‑1 AAAGATGTCTGACGGTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGA < 1:99899/68‑1 GTCTGACGGTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGT < 1:2157484/68‑1 GTCTGACGGTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGT < 1:1346313/68‑1 GTCTGACGGTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGT < 1:506908/68‑1 GTCTGACGGTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGT < 1:2029745/68‑1 GTCTGACGGTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGT < 1:1961084/68‑1 GTCTGACGGTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGT < 1:3163496/68‑1 TCTGACGGTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGTG > 1:2035068/1‑68 CTGACGGTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGTGT < 1:1417600/68‑1 GACGGTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGTGTAT < 1:3349448/68‑1 GGTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGAT > 1:1187792/1‑68 GTAACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATG < 1:446932/68‑1 ACCAAATGCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTG > 1:2503059/1‑68 CAAATGCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTT < 1:2969330/68‑1 CAAATGCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTT < 1:2457679/68‑1 GCAGCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGA > 1:873541/1‑68 GCAATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGT < 1:3357102/68‑1 AATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGC < 1:3226482/68‑1 ATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCT < 1:2676568/68‑1 ATACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCT < 1:2597320/68‑1 ACATTTGTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCC < 1:784484/68‑1 ACATTANTTTTAGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCC > 1:2099372/1‑68 TTTTAGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCT < 1:507887/68‑1 GCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGT < 1:895489/68‑1 CGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTT > 1:1249735/1‑68 GCGCAATTTCTGAAAAATATGTCTGACGGTAACCAAATGCAGCAATACATTTGTTTTAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1720953‑1720894‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTT < NC_000913/1979270‑1979204 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |