| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 15 (0.330) | 9/134 | 1.5 | 42.9% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2806300 | 20 (0.440) | coding (291/1065 nt) | proW | glycine betaine ABC transporter membrane subunit ProW | |||||
GCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1978569‑1978503‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCCCTGGAAGACGGGACGGAAATGGGTAACG < NC_000913/2806300‑2806234 GCTGCATGACAAAGTCATNGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG > 1:2709511/1‑68GCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG > 1:1741454/1‑68GCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG > 1:2165669/1‑68GCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG > 1:2648651/1‑68GCTGCATGACAAAGTCATCGCGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG > 1:3097788/1‑68 CTGCGTGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGA < 1:2815086/68‑1 AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGA > 1:1413476/1‑68 GGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAAT < 1:1743808/68‑1 ATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAAC < 1:40287/68‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGC > 1:3518229/1‑68 ACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCCC > 1:3377903/1‑68 AGTCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCCCTGGAAGACGGGACGGAAA > 1:65245/1‑68 GTCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCCCTGGAAGACGGGACGGAAAT < 1:1134243/68‑1 TCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCCCTGGAAGACGGGACGGAAATG > 1:382476/1‑68 CGAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCCCTGGAAGACGGGACGGAAATGGGTAACG < 1:519030/68‑1 GCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1978569‑1978503‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCCCTGGAAGACGGGACGGAAATGGGTAACG < NC_000913/2806300‑2806234 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |