| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 291401 | NA (NA) | 137 (2.700) | 43/128 | 0.0 | 70.3% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 873161 = | 58 (1.140) | coding (183/2349 nt) | pdeI | putative c‑di‑GMP phosphodiesterase PdeI | |||||
Only 100 of 137 total aligned reads displayed.
AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/291338‑291401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGATTCAA > NC_000913/873161‑873224 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCGGCATCACCT < 1:2790748/65‑1AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:454933/1‑65 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAA > 1:2096976/1‑65 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAA > 1:751844/1‑65 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAA > 1:65061/1‑65 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAA > 1:3614541/1‑65 CCACTGGAGCACCTCAAAAACACCATCATACCCTAGATCAGTACGTTGGCAGCATCACCTGAACG < 1:2495365/65‑1 CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACG < 1:1004316/65‑1 CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTC > 1:4006589/1‑65 CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTC > 1:2681458/1‑65 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGCTCGG > 1:2495350/1‑65 GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGC < 1:230432/65‑1 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCC > 1:1184550/1‑65 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCC > 1:3499397/1‑65 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCC > 1:3410272/1‑65 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCC > 1:437750/1‑65 GCACCTCAAAAACACCATCATACACTAAATCAGTAGGTTGGCAGCATCACCTGAACGTTCGGCCC > 1:2159497/1‑65 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCC < 1:3127188/65‑1 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCC > 1:595006/1‑65 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCC > 1:2127386/1‑65 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCC > 1:965345/1‑65 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCC > 1:1321108/1‑65 CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGA < 1:1474565/65‑1 CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGA < 1:2878960/65‑1 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACA < 1:1033769/65‑1 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACA < 1:1081942/65‑1 TCAAAAACACCATCATACACTAAATCAGTAAGTAGGCAGTATCGCCTGAACGTTCGGCCCTGACA < 1:612275/65‑1 AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAA > 1:719518/1‑65 AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAA < 1:1167677/65‑1 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGTCATTAAA > 1:2429865/1‑65 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAA > 1:2567891/1‑65 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAA > 1:1717865/1‑65 ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAG > 1:776870/1‑65 ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAG > 1:2400119/1‑65 ctCCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGATCGTTCGGCCCTGACATTAAAGG < 1:1119079/63‑1 CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGG < 1:1446961/65‑1 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGA > 1:1084446/1‑65 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGA > 1:165129/1‑65 CCAACATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGAC < 1:147211/65‑1 TCATCCACTAAATCAGTAACTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCA < 1:799869/65‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCA < 1:2823960/65‑1 ATACACTAAATCGGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACT < 1:2220312/65‑1 ATACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACT < 1:1666105/65‑1 accCTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGT < 1:3894369/62‑1 ACACTAAATCAGTAAGTTGGCAGCATCCCCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGT < 1:3909258/65‑1 ACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGT > 1:3782180/1‑65 ACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGT < 1:2658350/65‑1 ACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGT > 1:3505345/1‑65 ACACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGT < 1:2853089/65‑1 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTAT > 1:1021797/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTAT > 1:144874/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTAT > 1:3502279/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTAT > 1:1296727/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTAT > 1:1310935/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTAT > 1:3184377/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTAT > 1:3156701/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTAT > 1:2200698/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTAT > 1:1578865/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTAT > 1:2988160/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTAT > 1:701558/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTAT > 1:1962762/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTAT > 1:2393356/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTAT > 1:869277/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTAT > 1:940994/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTAT > 1:2671618/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTAT > 1:2668400/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTAT > 1:2602880/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTGAACGTCCGGCCCTGACATTAAAGGACTCACTGTct > 1:204560/1‑63 ACTAAATCAGTAAGTTGGCACCATCACCTGAACGTTCGACCCTGACATTAAAGGACTCACTGTAT > 1:2340991/1‑65 TCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTA > 1:1614909/1‑65 TCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTA > 1:4010453/1‑65 TCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTA > 1:3933264/1‑65 TCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTA > 1:1271309/1‑65 TCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTA > 1:1416732/1‑65 TCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTA > 1:3623349/1‑65 TCAGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTA > 1:2965517/1‑65 AGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAA > 1:3542957/1‑65 AGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAA > 1:1336425/1‑65 AGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAA > 1:2856063/1‑65 AGTAAGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAA > 1:2021141/1‑65 AGTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAAT < 1:1942283/65‑1 GTTGGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATA > 1:2290964/1‑65 GGCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAG > 1:811225/1‑65 GCAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGA < 1:124839/65‑1 CAGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAG < 1:884067/65‑1 AGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGG > 1:3785306/1‑65 AGCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGG > 1:1886937/1‑65 GCATCTCCTGAACGTTCGGACCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGA < 1:1693277/65‑1 GCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGA > 1:47765/1‑65 GCATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGA > 1:3261077/1‑65 CATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAG < 1:3944273/65‑1 CATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAG < 1:3798003/65‑1 ATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGA < 1:2966133/65‑1 ATCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGA < 1:3896627/65‑1 TCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGAT < 1:3060809/65‑1 TCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGAT < 1:3264883/65‑1 TCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGAT < 1:3346039/65‑1 TCACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGAT < 1:2463182/65‑1 ACCTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGATTC > 1:3934344/1‑65 CTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGATTCAA > 1:3011634/1‑65 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/291338‑291401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGATTCAA > NC_000913/873161‑873224 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |