| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 291401 | NA (NA) | 137 (2.700) | 43/128 | 0.0 | 70.3% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 873161 = | 58 (1.140) | coding (183/2349 nt) | pdeI | putative c‑di‑GMP phosphodiesterase PdeI | |||||
Only 100 of 196 total aligned reads displayed.
TAAAACGTGCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGATTCAAC > NC_000913/873097‑873225 | agaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacct > 1:454933‑M2/65‑65 (MQ=255) aaaaCGTGCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTg > 1:840819/1‑65 (MQ=255) agccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGaa > 1:65061‑M2/62‑65 (MQ=255) aCGTGCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAAc > 1:217589/1‑65 (MQ=255) aCGTGCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAAc > 1:89993/1‑65 (MQ=255) aCGTGCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAAc > 1:4031845/1‑65 (MQ=255) ccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACg < 1:1004316‑M2/6‑1 (MQ=255) ccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACg > 1:1373247‑M2/60‑65 (MQ=255) gTGCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGt < 1:3847209/65‑1 (MQ=255) gTGCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGt > 1:3792994/1‑65 (MQ=255) gTGCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGt > 1:3387110/1‑65 (MQ=255) ctggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTc > 1:2681458‑M2/57‑65 (MQ=255) ggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGCTCgg > 1:2495350‑M2/55‑65 (MQ=255) gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGc < 1:230432‑M2/12‑1 (MQ=255) gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGc < 1:2461447‑M2/12‑1 (MQ=255) gagcacctcaaaaacaccatcagtcactaaatcagtaagttggcagcatcaccTGAACGTTCGGc < 1:2953478‑M2/12‑1 (MQ=255) gATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGc < 1:2696727/65‑1 (MQ=255) gATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGc < 1:1951262/65‑1 (MQ=255) gATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGc < 1:1859093/65‑1 (MQ=255) agcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGcc > 1:437750‑M2/53‑65 (MQ=255) agcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGcc > 1:1184550‑M2/53‑65 (MQ=255) gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGccc > 1:2127386‑M2/52‑65 (MQ=255) gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGccc > 1:1560045‑M2/52‑65 (MQ=255) gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGccc < 1:3127188‑M2/14‑1 (MQ=255) gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGccc > 1:1321108‑M2/52‑65 (MQ=255) gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGccc > 1:595006‑M2/52‑65 (MQ=255) gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGccc > 1:965345‑M2/52‑65 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTg > 1:3973124‑M2/50‑65 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTg > 1:733085‑M2/50‑65 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCACTg > 1:3322993‑M2/50‑65 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGa < 1:2878960‑M2/17‑1 (MQ=255) ccGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGa < 1:3821345/65‑1 (MQ=255) ggCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGAc < 1:2511346/64‑1 (MQ=255) cGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGAc < 1:1780626/65‑1 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACa < 1:537004‑M2/19‑1 (MQ=255) gCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACa < 1:3887413/65‑1 (MQ=255) gCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACa < 1:774249/65‑1 (MQ=255) gCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACa < 1:3545208/65‑1 (MQ=255) tGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTaa < 1:3413721/65‑1 (MQ=255) tGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTaa < 1:2807078/65‑1 (MQ=255) aaacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTaa < 1:1167677‑M2/23‑1 (MQ=255) aacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGTCATTaaa > 1:2429865‑M2/42‑65 (MQ=255) aacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTaaa > 1:2567891‑M2/42‑65 (MQ=255) aacaccatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTaaa > 1:1717865‑M2/42‑65 (MQ=255) ctccatcatacactaaatcagtaagttggcagcatcaccTGATCGTTCGGCCCTGACATTAAAgg < 1:1119079‑M2/26‑1 (MQ=255) aCTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAgg > 1:1994815/1‑65 (MQ=255) accatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGa > 1:1084446‑M2/39‑65 (MQ=255) accatcatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGa > 1:685950‑M2/39‑65 (MQ=255) ccaacatacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGAc < 1:147211‑M2/28‑1 (MQ=255) tATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACt < 1:3089586/65‑1 (MQ=255) tcatccactaaatcagtaacttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCa < 1:799869‑M2/31‑1 (MQ=255) catacactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCAc < 1:2089548‑M2/32‑1 (MQ=255) cAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACt < 1:1683039/65‑1 (MQ=255) cAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACt < 1:707464/65‑1 (MQ=255) acactaaatcagtaagttggcagcatccccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGt < 1:3909258‑M2/35‑1 (MQ=255) acactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGt > 1:3782180‑M2/31‑65 (MQ=255) acactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGt > 1:3505345‑M2/31‑65 (MQ=255) acactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGt < 1:2853089‑M2/35‑1 (MQ=255) acactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGt < 1:126593‑M2/35‑1 (MQ=255) acactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGt < 1:2658350‑M2/35‑1 (MQ=255) acactaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGt > 1:1044130‑M2/31‑65 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtat > 1:3930000‑M2/29‑65 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtat > 1:144874‑M2/29‑65 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtat > 1:3501961‑M2/29‑65 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtat > 1:869277‑M2/29‑65 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtat > 1:940994‑M2/29‑65 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtat > 1:1021797‑M2/29‑65 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtat > 1:3156701‑M2/29‑65 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtat > 1:2988160‑M2/29‑65 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtat > 1:2841729‑M2/29‑65 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtat > 1:2671618‑M2/29‑65 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtat > 1:3184377‑M2/29‑65 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtat > 1:2602880‑M2/29‑65 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtat > 1:3211094‑M2/29‑65 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtat > 1:2393356‑M2/29‑65 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtat > 1:1663883‑M2/29‑65 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtat > 1:2200698‑M2/29‑65 (MQ=255) actaaatcagtaagttggcagcatcaccTGAACGTCCGGCCCTGACATTAAAGGACTCACtgtct > 1:204560‑M2/29‑63 (MQ=255) aaaaCGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGtat > 1:411369/1‑65 (MQ=255) tcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATttatta > 1:1614909‑M2/23‑65 (MQ=255) tcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATttatta > 1:4010453‑M2/23‑65 (MQ=255) tcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATttatta > 1:1416732‑M2/23‑65 (MQ=255) tcagtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATttatta > 1:3623349‑M2/23‑65 (MQ=255) agtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTaaa > 1:2021141‑M2/21‑65 (MQ=255) agtaagttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTaaa > 1:1305901‑M2/21‑65 (MQ=255) gCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTaaaa < 1:1888906/65‑1 (MQ=255) gttggcagcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATa > 1:2290964‑M2/16‑65 (MQ=255) gcatcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAgagga > 1:47765‑M2/9‑65 (MQ=255) atcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGgaga < 1:2966133‑M2/59‑1 (MQ=255) atcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGgaga < 1:3896627‑M2/59‑1 (MQ=255) atcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGgaga < 1:809533‑M2/59‑1 (MQ=255) atcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGgaga > 1:2375953‑M2/7‑65 (MQ=255) tcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGAt < 1:3264883‑M2/60‑1 (MQ=255) tcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGAt < 1:3346039‑M2/60‑1 (MQ=255) tcaccTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGAt < 1:3614328‑M2/60‑1 (MQ=255) gATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGAt < 1:2107270/65‑1 (MQ=255) accTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGATTc > 1:3934344‑M2/4‑65 (MQ=255) ttGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGATTCaa < 1:2335130/65‑1 (MQ=255) cTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGATTCaa > 1:3011634‑M2/2‑65 (MQ=255) tGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGATTCAAc > 1:1282264/1‑65 (MQ=255) | TAAAACGTGCCGATAGCCGCTTTGAACTTATTCAGAAAAACGTTGGCTATTTCTTTAAAGATATTGAACGTTCGGCCCTGACATTAAAGGACTCACTGTATTTATTAAAAAATACAGAGGAGATTCAAC > NC_000913/873097‑873225 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |