New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 160379834 (0.670)6 (0.120) 5/128 2.3 15.0% coding (780/1029 nt) lsrC Autoinducer‑2 ABC transporter membrane subunit LsrC
?NC_000913 1603802 = 34 (0.670)coding (784/1029 nt) lsrC Autoinducer‑2 ABC transporter membrane subunit LsrC
Rejected: Frequency below/above cutoff threshold.

AGATGAAAGCAATTGCAGCCTGCGTGCTGGGCGGCATTAGTTTGCTCGGTGGTTCCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1603740‑1603798
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCATTGGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGATAGC  >  NC_000913/1603802‑1603849
                                                                                                           
AGATGAAAGCAATTGCAGCCTGCGTGCTGGGCGGCATTATTTTGCTCGGTGGTCGCCGTATCATT                                            <  1:2787162/65‑1
 GATGAAAGCAATTGCCGCCTGCGTGCTGGGCGGCATTAGTTTTCTCGGTGGTCGCCGTATCATTG                                           <  1:1561768/65‑1
               CAGCCTGCGTGCTGGGGGGCATTAGTTTGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGC                             <  1:2037274/65‑1
                      CGTGCTGGGCAGCATTATTTTGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGT                      <  1:1400212/65‑1
                                    TTAGTTTGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATC        <  1:1308325/65‑1
                                          TGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGATAGC  <  1:932414/65‑1
                                                                                                           
AGATGAAAGCAATTGCAGCCTGCGTGCTGGGCGGCATTAGTTTGCTCGGTGGTTCCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1603740‑1603798
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCATTGGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGATAGC  >  NC_000913/1603802‑1603849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.