| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 486,025 | IS1 (–) +9 bp | coding (265‑273/648 nt) | acrR → | DNA‑binding transcriptional repressor AcrR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 279163 = | NA (NA) | 60 (1.510) | 33/128 | 0.0 | 98.1% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 486033 | 1 (0.030) | coding (273/648 nt) | acrR | DNA‑binding transcriptional repressor AcrR | |||||
| * | ? | NC_000913 | = 291401 | NA (NA) | 53 (1.330) | 27/128 | 0.1 | 97.9% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 486025 = | 1 (0.030) | coding (265/648 nt) | acrR | DNA‑binding transcriptional repressor AcrR | |||||
AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/291338‑291401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGA > NC_000913/486025‑486088 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:572462/1‑65AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:2882829/1‑65 GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTAAG < 1:2917937/65‑1 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTAAGCGAGAT > 1:1947191/1‑65 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATAT > 1:590857/1‑65 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATAT > 1:562850/1‑65 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATAT > 1:2781933/1‑65 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATT > 1:2872225/1‑65 CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTA < 1:1711053/65‑1 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAA > 1:2472745/1‑65 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAA > 1:2350734/1‑65 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAA > 1:1944687/1‑65 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAA > 1:2880290/1‑65 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAA > 1:1814118/1‑65 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAA < 1:1425456/65‑1 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAATTCAT < 1:3168279/65‑1 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTT > 1:2366485/1‑65 ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATAATAATTCATGTTC > 1:1632379/1‑65 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTT > 1:2915190/1‑65 CATACACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATC < 1:2119317/65‑1 ATACACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCC > 1:1852899/1‑65 TACACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCA < 1:2159344/65‑1 TACACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCA < 1:1144777/65‑1 ACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCGACGG > 1:839464/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGG > 1:3152319/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGG > 1:1078357/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGG > 1:71476/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGG > 1:3252202/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGG > 1:2929331/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGG > 1:2857337/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGG > 1:2531317/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGG > 1:2870588/1‑65 TCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAG > 1:3230811/1‑65 TCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAG > 1:1139858/1‑65 TCAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAG > 1:54895/1‑65 CAGTAAGTTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGA < 1:792834/65‑1 AGTTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAAC > 1:226699/1‑65 TTGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGG < 1:3068115/65‑1 TGGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGC < 1:314453/65‑1 GGCAGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCG > 1:1187169/1‑65 AGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCG > 1:2500585/1‑65 AGCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCG < 1:1781345/65‑1 GCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGA > 1:1385947/1‑65 GCATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGA > 1:575568/1‑65 CATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGAT < 1:22038/65‑1 CATCACCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGAT < 1:508099/65‑1 CCTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTG > 1:592198/1‑65 CTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGA > 1:501726/1‑65 CTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGA > 1:1835070/1‑65 CTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGA > 1:1187428/1‑65 CTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGA > 1:3084909/1‑65 CTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGA > 1:1683817/1‑65 CTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAACAACGGCGTCGATTATTGA > 1:1726561/1‑65 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/291338‑291401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGA > NC_000913/486025‑486088 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |