| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 883,553 | IS30 (+) +2 bp | intergenic (‑165/‑119) | ybjG ← / → mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux pump MdfA/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 270541 = | NA (NA) | 53 (1.330) | 28/128 | 0.1 | 100% | noncoding (1/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 883554 | 0 (0.000) | intergenic (‑166/‑119) | ybjG/mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux pump MdfA/Na(+):H(+) antiporter/K(+):H(+) antiporter | |||||
| * | ? | NC_000913 | 883553 = | 0 (0.000) | 49 (1.230) | 20/128 | 0.3 | 100% | intergenic (‑165/‑120) | ybjG/mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux pump MdfA/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| ? | NC_000913 | = 1470516 | NA (NA) | noncoding (1221/1221 nt) | IS30 | repeat region | |||||
CGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/883612‑883553‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTT < NC_000913/1470516‑1470456 CGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACTGTAG < 1:2382763/65‑1 GAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACTGTAGA > 1:1019961/1‑65 TTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCA > 1:988451/1‑65 TTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCA > 1:712005/1‑65 TTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACCGTAGATTCA > 1:1661698/1‑65 aagCCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAAT < 1:2024775/62‑1 AAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAAT < 1:2739258/65‑1 AAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAAT < 1:2140592/65‑1 AAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAAT < 1:2016741/65‑1 CCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCA < 1:1262373/65‑1 CCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCA < 1:889226/65‑1 CCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCA > 1:28577/1‑65 CGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACA > 1:2765095/1‑65 GTTAAGCACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACC > 1:1244686/1‑65 GTTAAGCACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACC > 1:2716535/1‑65 GTTAAGCACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACC > 1:247029/1‑65 TAAGCACATTCTTACATTATTACGAGTATAGTTACTGTAGATTCAATCTGTCAATGCAACACCCC < 1:1434709/65‑1 TAAGCACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCC < 1:268488/65‑1 TAAGCACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCC < 1:3259935/65‑1 TAAGCACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCC < 1:3138718/65‑1 TAAGCACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCC < 1:3102672/65‑1 AAGCACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCCT < 1:1559518/65‑1 GCACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTTAATGCAACACCCCTTT > 1:1951394/1‑65 GCACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTT > 1:882075/1‑65 ACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCA > 1:3062711/1‑65 ACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCA < 1:1383062/65‑1 ACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCA > 1:1410208/1‑65 ACATTCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCA < 1:3256192/65‑1 ACATTCTTACATTATTACGAGTATAGCTACGGTAGATTCAATCTGTCAATGCAACACCCCTTTCA < 1:498816/65‑1 TCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTA > 1:3000740/1‑65 TCTTACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTA > 1:2852801/1‑65 ACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTC > 1:16541/1‑65 ACATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTC > 1:2759776/1‑65 ATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTT > 1:2906035/1‑65 ATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTT > 1:1928435/1‑65 ATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTT > 1:1851058/1‑65 ATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTT > 1:1838623/1‑65 ATTATTACGAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTT > 1:704502/1‑65 GAGTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTT > 1:3058730/1‑65 GTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTT > 1:2962507/1‑65 GTATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTT > 1:352856/1‑65 ATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGA > 1:845855/1‑65 ATAGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGA < 1:2221368/65‑1 GCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACT > 1:1731344/1‑65 GCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACT < 1:1863257/65‑1 CTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATTTCTTTCGGTGTTTTGAACTT > 1:809456/1‑65 CTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACct > 1:3273589/1‑63 CTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTT > 1:797219/1‑65 CTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTT > 1:320104/1‑65 CGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/883612‑883553‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTT < NC_000913/1470516‑1470456 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |