| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 883661 = | 8 (0.160) | 58 (1.160) | 31/134 | 0.1 | 87.9% | intergenic (‑273/‑12) | ybjG/mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux pump MdfA/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| ? | NC_000913 | = 883666 | NA (NA) | intergenic (‑278/‑7) | ybjG/mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux pump MdfA/Na(+):H(+) antiporter/K(+):H(+) antiporter | |||||
TTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCC > NC_000913/883595‑883727 | tttCAGCTACAAAATTCGCTTGCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCg > 1:31409/1‑68 (MQ=255)tttCAGCTACAAAATTCGCTTGCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCg > 1:89122/1‑68 (MQ=255)tttCAGCTACAAAATTCGCTTGCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCg > 1:495372/1‑68 (MQ=255)tttCAGCTACAAAATTCGCTTGCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCg > 1:878012/1‑68 (MQ=255)ctacaaaattcgcttgctcgttagctgcgcttttattaaactctgcgcgattattattggcgaagacg > 1:1785864‑M1/67‑68 (MQ=255) acaaaattcgcttgctcgttagctgcgcttttattaaactctgcgcgattattattggcgaagacgaa > 1:1823998‑M1/65‑68 (MQ=255) acaaaattcgcttgctcgttagctgcgcttttattaaactctgcgcgattattattggcgaagacgaa > 1:3834350‑M1/65‑68 (MQ=255) acaaaattcgcttgctcgttagctgcgcttttattaaactctgcgcgattattattggcgaagacgaa > 1:2114196‑M1/65‑68 (MQ=255) aaaattcgcttgctcgttagctgcgcttttattaaactctgcgcgattattattggcgaagacgaaga < 1:3185640‑M1/6‑1 (MQ=255) aaaattcgcttgctcgttagctgcgcttttattaaactctgcgcgattattattggcgaagacgaaga < 1:922520‑M1/6‑1 (MQ=255) aattcgcttgctcgttagctgcgcttttattaaactctgcgcgattattattggcgaagaCGAAGaaa < 1:2896788‑M1/8‑1 (MQ=255) tcgcttgctcgttagctgcgcttttattaaactctgcgcgattattattggcgaagaCGAAGAAATtg < 1:993406‑M1/11‑1 (MQ=255) cttgctcgttagctgcgcttttattaaactctgcgcgattattattggcgaagaCGAAGAAATtgcat < 1:1295506‑M1/14‑1 (MQ=255) cttgctcgttagctgcgcttttattaaactctgcgcgattattattggcgaagaCGAAGAAATtgcat < 1:284629‑M1/14‑1 (MQ=255) tcgttagctgcgcttttattaaactctgcgcgattattattggcgaagaCGAAGAAATTGCATGCaaa > 1:1831677‑M1/50‑68 (MQ=255) tcgttagctgcgcttttattaaactctgcgcgattattattggcgaagaCGAAGAAATTGCATGCaaa > 1:3788858‑M1/50‑68 (MQ=255) tcgttagctgcgcttttattaaactctgcgcgattattattggcgaagaCGAAGAAATTGCATGCaaa > 1:1424548‑M1/50‑68 (MQ=255) gCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCaaa < 1:2169508/68‑1 (MQ=255) gctgcgcttttattaaactctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAaaataaat < 1:3480572‑M1/25‑1 (MQ=255) gctgcgcttttattaaactctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAaaataaat < 1:2124271‑M1/25‑1 (MQ=255) gctgcgcttttattaaactctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAaaataaat < 1:3193883‑M1/25‑1 (MQ=255) gctgcgcttttattaaactctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAaaataaat < 1:3877040‑M1/25‑1 (MQ=255) tgcgcttttattaaactctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTa < 1:2645084‑M1/27‑1 (MQ=255) gcgcttttattaaactctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAg > 1:988673‑M1/41‑68 (MQ=255) ttttattaaactctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTc > 1:111899‑M1/37‑68 (MQ=255) attaaactctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGt > 1:1088112‑M1/33‑68 (MQ=255) ttaaactctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTg > 1:2726637‑M1/32‑68 (MQ=255) ttaaacgctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTg > 1:3722428‑M1/32‑68 (MQ=255) aactctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCa < 1:230374‑M1/40‑1 (MQ=255) ctctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAgg > 1:1589583‑M1/27‑68 (MQ=255) ttaAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGc < 1:2206453/68‑1 (MQ=255) tctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGc > 1:2805463‑M1/26‑68 (MQ=255) tctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGc < 1:3511058‑M1/43‑1 (MQ=255) tctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGc < 1:3147516‑M1/43‑1 (MQ=255) tctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGc > 1:2813522‑M1/26‑68 (MQ=255) tctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGc > 1:549560‑M1/26‑68 (MQ=255) tctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGc < 1:3967316‑M1/43‑1 (MQ=255) tctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGc < 1:1653597‑M1/43‑1 (MQ=255) tctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGc > 1:1983087‑M1/26‑68 (MQ=255) tctgcgcgattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGGGCCAGGc < 1:336852‑M1/43‑1 (MQ=255) gcgattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGa < 1:1440941‑M1/48‑1 (MQ=255) gcgattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGa > 1:3514613‑M1/21‑68 (MQ=255) ctctGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGa < 1:1601237/68‑1 (MQ=255) gattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACg > 1:2177236‑M1/19‑68 (MQ=255) gattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACg > 1:3198661‑M1/19‑68 (MQ=255) gattattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACg > 1:2168706‑M1/19‑68 (MQ=255) tattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCa < 1:997882‑M1/53‑1 (MQ=255) tattattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCa < 1:196862‑M1/53‑1 (MQ=255) gcgATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAg < 1:2884469/68‑1 (MQ=255) attattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAg > 1:1059062‑M1/15‑68 (MQ=255) ttattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAgg > 1:1114312‑M1/14‑68 (MQ=255) ttattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAgg > 1:1329312‑M1/14‑68 (MQ=255) ttattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAgg > 1:1415341‑M1/14‑68 (MQ=255) ttattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAgg > 1:1599051‑M1/14‑68 (MQ=255) ttatgggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAgg > 1:2703011‑M1/14‑68 (MQ=255) tattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGc > 1:100636‑M1/13‑68 (MQ=255) tattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGc < 1:779504‑M1/56‑1 (MQ=255) tattggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGc > 1:40391‑M1/13‑68 (MQ=255) attggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCg > 1:3238112‑M1/12‑68 (MQ=255) ttggcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGt < 1:1800959‑M1/58‑1 (MQ=255) tgtcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGtt > 1:4064286‑M1/10‑68 (MQ=255) gcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTAc > 1:780231‑M1/8‑68 (MQ=255) gcgaagaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTAc > 1:2283829‑M1/8‑68 (MQ=255) agaCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACtttt > 1:3782419‑M1/4‑68 (MQ=255) aCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTcc < 1:2594689‑M1/67‑1 (MQ=255) aCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGCCAGGCGTTACTTTTcc < 1:333143‑M1/67‑1 (MQ=255) | TTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCC > NC_000913/883595‑883727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |