| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 485,865 | IS1 (+) +8 bp | coding (105‑112/648 nt) | acrR → | DNA‑binding transcriptional repressor AcrR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 279163 = | NA (NA) | 49 (1.180) | 22/128 | 0.2 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 485865 = | 0 (0.000) | coding (105/648 nt) | acrR | DNA‑binding transcriptional repressor AcrR | |||||
| * | ? | NC_000913 | = 291401 | NA (NA) | 43 (1.030) | 23/128 | 0.2 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 485872 | 0 (0.000) | coding (112/648 nt) | acrR | DNA‑binding transcriptional repressor AcrR | |||||
ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/279224‑279163‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTC > NC_000913/485865‑485927 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGA > 1:1504588/1‑65ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGA > 1:3163785/1‑65ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGA > 1:1992328/1‑65 TGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGAG < 1:599632/65‑1 AGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGAGATTGCA > 1:3258267/1‑65 CGGGCATTATCTGGACATAAAACACTATCAATAAGTTGGAGTCATTACCCGAGATTGCAAAAGCA < 1:2677621/65‑1 GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGAGATTGCAAAAGCAGC > 1:2380583/1‑65 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTT > 1:1160163/1‑65 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTT > 1:678282/1‑65 TGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTAC < 1:2971835/65‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGC > 1:3167238/1‑65 AAAACACTATCAATAAGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGT < 1:1002146/65‑1 AAAACACTATCAATAAGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGT < 1:2707672/65‑1 AAAACACTATCAATAAGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGT < 1:2094915/65‑1 AAAACACTATCAATAAGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGT < 1:203464/65‑1 AAAACACTATCAATAAGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGT < 1:1343095/65‑1 AAATACTATCAATAAGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGcg > 1:1742484/1‑63 AAACACTATCAATAAGTTGGAGTCATTACCCGAGACTGCAAAAGACGCTGGCGCAACGCGCGGTG > 1:1461231/1‑65 AACACTATCAATAAGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGC < 1:1221705/65‑1 AACACTATCAATAAGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGC < 1:2535316/65‑1 AACACTATCAATAAGTTGGAATCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGC < 1:525322/65‑1 ACACTATCAATAAGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCA > 1:678570/1‑65 ACACTATCAATAAGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCA > 1:2301740/1‑65 ACACTATCAATAAGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGGGCA > 1:989148/1‑65 ACTATCAATAAGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAAT < 1:490922/65‑1 TATCAATAGGTTGGGGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCT < 1:2054303/65‑1 TATCAATAAGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCT < 1:1104740/65‑1 TAAGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGC > 1:981149/1‑65 AGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCAT > 1:800197/1‑65 AGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCAT > 1:741603/1‑65 AGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCAT > 1:523212/1‑65 AGTTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCAT > 1:1537531/1‑65 TTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTT > 1:2175087/1‑65 TTGGAGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGGGCAATCTACTGGCATTT > 1:1536280/1‑65 AGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAA > 1:3070199/1‑65 AGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAA > 1:1773420/1‑65 AGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAA > 1:658143/1‑65 AGTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTAAGCGCGGTGCAATCTACTGGCATTTTAAA > 1:1829721/1‑65 GTCGTTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAG > 1:2220750/1‑65 GTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAcg > 1:1462656/1‑63 GTCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAG > 1:530187/1‑65 TCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCCATCTACTGGCATTTTAAAGA > 1:423526/1‑65 TCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGA > 1:36788/1‑65 TCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGA > 1:862002/1‑65 TCATTACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGCGGCAATCTACTGGCATTTTAAAGA > 1:2780208/1‑65 TACCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAG < 1:462500/65‑1 CCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTC > 1:1563029/1‑65 CCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAACCTACTGGCATTTTAAAGACAAGTC > 1:2778319/1‑65 CCCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGGGCAATCTACTGGCATTTTAAAGACAAGgc > 1:2062675/1‑63 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/279224‑279163‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTC > NC_000913/485865‑485927 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |