New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1603798	29 (0.700)	8 (0.190)	5/128	2.2	21.6%	coding (780/1029 nt)	lsrC	Autoinducer‑2 ABC transporter membrane subunit LsrC
	?	NC_000913	1603802 =	29 (0.700)					coding (784/1029 nt)	lsrC	Autoinducer‑2 ABC transporter membrane subunit LsrC

GCAATTGCAGCCTGCGTGCTGGGCGGCATTAGTTTGCTCGGTGGTTCCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1603748‑1603798 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCATTGGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGATAGCGTACTGGTGCTGTTGC  >  NC_000913/1603802‑1603865                                                                                                                     GCAATTGCAGCCTGCGTGCTGGGCGGCATTATTTTGCTCGGTGGTCGCCGTATCATTAGTGCGGT                                                    <  1:100996/65‑1               CGTGCTGGGCGGCATTAGTTTGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGT                                      <  1:824496/65‑1                                GTTTGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGAT                     <  1:397178/65‑1                                   TGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGATAGC                  <  1:1494859/65‑1                                   TGCTCGGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGATAGC                  <  1:1814142/65‑1                                        GGTGGTCGCCGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGATAGCGTACT             <  1:806387/65‑1                                                ccGTATCATTAGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGATAGCGTACTGGTGCTGT     <  1:180590/63‑1                                                   TATCATTAGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGATAGCGTACTGGTGCTGTTGC  <  1:229730/65‑1                                                                                                                     GCAATTGCAGCCTGCGTGCTGGGCGGCATTAGTTTGCTCGGTGGTTCCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1603748‑1603798 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCATTGGTGCGGTACTCGGCGCATGGTTCCTGACGCAGATCGATAGCGTACTGGTGCTGTTGC  >  NC_000913/1603802‑1603865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.