mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 27 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 310,934 | 0 | A | C | 61.9% | ‑3.4 / 20.5 | 21 | F135V (TTC→GTC) | ecpR | DNA‑binding transcriptional dual regulator MatA |
| * | NC_000913 | 4,021,824 | 0 | T | G | 54.5% | ‑2.6 / 13.5 | 11 | G533G (GGT→GGG) | ubiB | ubiquinone biosynthesis protein UbiB |
| * | NC_000913 | 2,223,410 | 0 | T | G | 50.0% | 1.8 / 15.8 | 16 | V409G (GTG→GGG) | dld | D‑lactate dehydrogenase |
| * | NC_000913 | 421,152 | 0 | A | . | 43.8% | 32.2 / 25.1 | 16 | coding (167/1374 nt) | proY | putative transporter ProY |
| * | NC_000913 | 4,296,060 | 0 | C | T | 42.2% | 28.3 / 77.3 | 64 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,414,906 | 0 | T | G | 42.1% | 12.0 / 16.0 | 19 | V211G (GTG→GGG) | aidB | putative acyl‑CoA dehydrogenase AidB |
| * | NC_000913 | 421,151 | 0 | T | . | 38.9% | 39.7 / 25.0 | 18 | coding (166/1374 nt) | proY | putative transporter ProY |
| * | NC_000913 | 421,147 | 0 | G | . | 35.0% | 37.1 / 27.1 | 20 | coding (162/1374 nt) | proY | putative transporter ProY |
| * | NC_000913 | 421,148 | 0 | G | . | 35.0% | 37.9 / 27.1 | 20 | coding (163/1374 nt) | proY | putative transporter ProY |
| * | NC_000913 | 1,711,796 | 0 | A | C | 32.1% | 48.1 / 10.3 | 28 | T92P (ACC→CCC) | nth | endonuclease III |
| * | NC_000913 | 4,154,935 | 0 | A | C | 31.7% | 69.8 / 26.1 | 41 | intergenic (‑88/‑66) | argE/argC | acetylornithine deacetylase/N‑acetylglutamylphosphate reductase |
| * | NC_000913 | 3,563,481 | 0 | T | G | 31.2% | 45.8 / 20.4 | 32 | V490G (GTG→GGG) | glpD | aerobic glycerol 3‑phosphate dehydrogenase |
| * | NC_000913 | 421,141 | 0 | T | . | 30.0% | 49.5 / 19.7 | 20 | coding (156/1374 nt) | proY | putative transporter ProY |
| * | NC_000913 | 421,142 | 0 | A | . | 30.0% | 49.2 / 19.7 | 20 | coding (157/1374 nt) | proY | putative transporter ProY |
| * | NC_000913 | 1,525,765 | 0 | C | A | 29.2% | 41.1 / 10.2 | 24 | L72F (TTG→TTT) | ansP | L‑asparagine transporter |
| * | NC_000913 | 395,288 | 0 | A | T | 28.6% | 36.9 / 16.7 | 21 | F334I (TTC→ATC) | ampH | peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase |
| * | NC_000913 | 395,291 | 0 | C | G | 26.3% | 30.7 / 12.0 | 19 | G333R (GGT→CGT) | ampH | peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase |
| * | NC_000913 | 1,374,036 | 0 | T | G | 26.3% | 32.2 / 10.8 | 19 | L272R (CTC→CGC) | ycjO | putative ABC transporter membrane subunit YcjO |
| * | NC_000913 | 1,374,039 | 0 | T | G | 25.0% | 47.1 / 12.7 | 24 | F273C (TTC→TGC) ‡ | ycjO | putative ABC transporter membrane subunit YcjO |
| * | NC_000913 | 1,374,040 | 0 | C | T | 25.0% | 34.5 / 12.7 | 24 | F273F (TTC→TTT) ‡ | ycjO | putative ABC transporter membrane subunit YcjO |