| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 3,536,300 | IS1 (+) +9 bp | coding (277‑285/720 nt) | ompR ← | DNA‑binding transcriptional dual regulator OmpR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3536300 = | 0 (0.000) | 55 (1.340) | 29/132 | 0.1 | 100% | coding (285/720 nt) | ompR | DNA‑binding transcriptional dual regulator OmpR |
| ? | NC_000913 | = 3584195 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 3536308 | 0 (0.000) | 41 (1.000) | 23/132 | 0.2 | 100% | coding (277/720 nt) | ompR | DNA‑binding transcriptional dual regulator OmpR |
| ? | NC_000913 | 3583428 = | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
GCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3536244‑3536308‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTT > NC_000913/3583428‑3583495 GCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGT > 1:3241965/1‑68GCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGT > 1:1017091/1‑68GCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGT > 1:3207479/1‑68GCCAGCAGTTCACGCGGGTTAAACGGTTTTGCAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGT > 1:806976/1‑68 CAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGA < 1:1623191/68‑1 GCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATG > 1:697432/1‑68 CAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGC < 1:2193583/68‑1 AGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCCGGCCTACGGTGATGCT > 1:2505785/1‑68 AGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGCT > 1:1040714/1‑68 AGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGCT > 1:2866904/1‑68 AGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGCT > 1:355889/1‑68 TCACGCGTGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAAGCCTACGGTGATGCTGCC > 1:1609971/1‑68 acaGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGCTGCCAACT < 1:617523/65‑1 CGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTT > 1:2764247/1‑68 TAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGA < 1:2530176/68‑1 TAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGA < 1:2202256/68‑1 CGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTA > 1:1792424/1‑68 CGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTA > 1:105345/1‑68 GTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTAGT < 1:1793560/68‑1 GTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTAGT < 1:218025/68‑1 GTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTAGT < 1:1205120/68‑1 GTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTAGT < 1:887421/68‑1 GTTTTGGAATGTAGTAGTCAGCGCCAATCTCCAGGCCTACGGTGATGCTGCCACCTTACTGATTTAGT < 1:3371813/68‑1 cagGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTAGTGT < 1:2349251/65‑1 GGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTAGTGTATG > 1:178962/1‑68 GGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTAGTGTATG > 1:769572/1‑68 AATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTAGTGTATGAT > 1:220123/1‑68 TGTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG > 1:1097553/1‑68 GTAGTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGT < 1:1878358/68‑1 GTCGTCAGCGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTT < 1:1086128/68‑1 TCAGCGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTG > 1:356225/1‑68 GCGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGG > 1:859427/1‑68 CGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGT < 1:2241772/68‑1 CGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGT < 1:2478822/68‑1 CGCCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGT < 1:3309002/68‑1 GCCAATCTCCAGGCCTACGGCGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTG > 1:1220427/1‑68 CCAATCTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGC < 1:919950/68‑1 TCTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCA > 1:1995588/1‑68 CTCCAGGCCTACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAG < 1:396700/68‑1 CCTACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTt > 1:1123041/1‑67 CCTACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGCGTTTTTGAGGTGCTCCAGTGGCTTt > 1:1794410/1‑67 GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTTTGTTT > 1:1762801/1‑68 GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTTTTT > 1:3036027/1‑68 GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTT > 1:133544/1‑68 GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTT < 1:3270517/68‑1 GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTT > 1:2853613/1‑68 GCCAGCAGTTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3536244‑3536308‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTT > NC_000913/3583428‑3583495 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |