| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1050545 | NA (NA) | 42 (1.070) | 24/126 | 0.1 | 67.7% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 1943189 | 20 (0.510) | coding (528/756 nt) | znuC | Zn(2(+)) ABC transporter ATP binding subunit | |||||
ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCC > NC_000913/1050487‑1050609 | aCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAt < 1:2586169/65‑1 (MQ=33) cAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAta < 1:551977/65‑1 (MQ=35) aaaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtac > 1:805189/1‑65 (MQ=37) aaaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtac > 1:44339/1‑65 (MQ=37) gTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacgta > 1:1299737/1‑65 (MQ=255) tCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCt < 1:2327459/65‑1 (MQ=255) ggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTga > 1:2369531/1‑65 (MQ=255) cATTATCTGAGCATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTgaga < 1:2547878/65‑1 (MQ=255) cATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTgaga < 1:790650/65‑1 (MQ=255) cATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTgaga < 1:1758515/65‑1 (MQ=255) cATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTgaga < 1:2900003/65‑1 (MQ=255) tCTGGACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAgg > 1:1288129/1‑65 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAgg > 1:872255/1‑65 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAgg < 1:2673892/65‑1 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAgg > 1:2101233/1‑65 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAgg < 1:3117242/65‑1 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAgg > 1:1448875/1‑65 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAgg > 1:1083931/1‑65 (MQ=255) aCATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGt < 1:2620105/65‑1 (MQ=255) cATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTc < 1:2847802/65‑1 (MQ=255) aaaaCACTATCAATAAGTGGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTAc < 1:1563632/65‑1 (MQ=255) acacTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACttt > 1:3096952/1‑65 (MQ=255) acacTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACttt > 1:2291193/1‑65 (MQ=255) cacTATCAATAAGTTGGAGTCATTACCGACAATAGGTACGCTTGAGATGAGGATTGTCTACTTTg > 1:3088139/1‑65 (MQ=255) acTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGa > 1:2876988/1‑65 (MQ=255) acTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGa < 1:2392918/65‑1 (MQ=255) acTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGa < 1:1063651/65‑1 (MQ=255) acTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGa < 1:1308809/65‑1 (MQ=255) acTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGa < 1:2340354/65‑1 (MQ=255) acTATCAATAAGTTGGAGTCATTACCGACAATACGCACGCTTGAGATCAGGATTGTCTACTTTGa < 1:361364/65‑1 (MQ=255) tATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGt < 1:665618/65‑1 (MQ=255) gaTCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGt < 1:1832123/64‑1 (MQ=255) aTCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGta < 1:2715994/65‑1 (MQ=255) tCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGtat > 1:1526237/1‑65 (MQ=255) tCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGtat < 1:1527825/65‑1 (MQ=255) cAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGtata < 1:596957/65‑1 (MQ=255) aTAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAAc < 1:1895452/65‑1 (MQ=255) aGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACacc > 1:2526091/1‑63 (MQ=255) aGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATc > 1:2023802/1‑65 (MQ=255) aGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATc > 1:3223585/1‑65 (MQ=255) aGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATc > 1:2254092/1‑65 (MQ=255) ttGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCt > 1:2272580/1‑65 (MQ=255) ggAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTtg < 1:2259580/65‑1 (MQ=255) aGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACCTTGAGTATAACATCCTtgtg > 1:162896/1‑65 (MQ=255) tCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGaa > 1:246197/1‑65 (MQ=255) aCCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAAtctc > 1:1719065/1‑65 (MQ=255) aCCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAAtctc < 1:2749993/65‑1 (MQ=255) aCCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAAtctc > 1:103088/1‑65 (MQ=255) cGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTccc < 1:2825356/65‑1 (MQ=255) | ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCC > NC_000913/1050487‑1050609 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |