New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	50 (1.340)	24/120	0.1	100%	intergenic (+253/‑33)	ychE/insH21	putative inner membrane protein/IS5 transposase and trans‑activator
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+151/‑484)	insH21/oppA	IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein

GCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT  >  NC_000913/1299434‑1299561                                                                 |                                                                gCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAA                                                                 >  1:681985‑M1/1‑65 (MQ=255) gCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAA                                                                 >  1:1941921‑M1/1‑65 (MQ=255) gCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAA                                                                 >  1:2758306‑M1/1‑65 (MQ=255) gCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAA                                                                 >  1:1780296‑M1/1‑65 (MQ=255) gCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAA                                                                 >  1:3039049‑M1/1‑65 (MQ=255) gCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCATTTGGTAGAGGAACGTGCTAA                                                                 >  1:1372710‑M1/1‑65 (MQ=255)   ttGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAat                                                               <  1:2565392‑M1/65‑3 (MQ=255)   ttGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAat                                                               <  1:3248144‑M1/65‑3 (MQ=255)   aggctGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAat                                                               <  1:1467773‑M1/63‑3 (MQ=255)    tGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAata                                                              <  1:247609‑M1/65‑4 (MQ=255)          agaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatc                                                        >  1:710037‑M1/1‑56 (MQ=255)            aataatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaa                                                      >  1:2414622‑M1/1‑54 (MQ=255)            aataatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaa                                                      >  1:68306‑M1/1‑54 (MQ=255)             ataatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaat                                                     <  1:289441‑M1/65‑13 (MQ=255)                atTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgt                                                  <  1:2801571‑M1/65‑16 (MQ=255)                atTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgt                                                  <  1:1173442‑M1/65‑16 (MQ=255)                  tGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgtta                                                >  1:2208591‑M1/1‑48 (MQ=255)                   gAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaa                                               <  1:2073072‑M1/65‑19 (MQ=255)                      aTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatt                                            <  1:3058418‑M1/65‑22 (MQ=255)                       tGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatta                                           >  1:2337355‑M1/1‑43 (MQ=255)                       tGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatta                                           >  1:2306658‑M1/1‑43 (MQ=255)                       tGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatta                                           >  1:2211360‑M1/1‑43 (MQ=255)                        gATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattat                                          <  1:681366‑M1/65‑24 (MQ=255)                          tattatTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattg                                        >  1:1856147‑M1/1‑40 (MQ=255)                              attaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgca                                    >  1:70670‑M1/1‑36 (MQ=255)                              attaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgca                                    >  1:2572342‑M1/1‑36 (MQ=255)                               ttaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcat                                   >  1:1234370‑M1/1‑35 (MQ=255)                                taATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatt                                  <  1:62708‑M1/65‑32 (MQ=255)                                taATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatt                                  <  1:855591‑M1/65‑32 (MQ=255)                                taATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatt                                  <  1:3117330‑M1/65‑32 (MQ=255)                                   ttCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttca                               >  1:18241‑M1/1‑31 (MQ=255)                                    tCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcac                              >  1:683900‑M1/1‑30 (MQ=255)                                     ccACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcact                             >  1:1446724‑M1/1‑29 (MQ=255)                                             tttGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaac                     <  1:1032643‑M1/65‑45 (MQ=255)                                                ggTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgt                  <  1:2429126‑M1/65‑48 (MQ=255)                                                ggTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgt                  <  1:2405417‑M1/65‑48 (MQ=255)                                                ggTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgt                  <  1:1802903‑M1/65‑48 (MQ=255)                                                ggTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgt                  <  1:1400088‑M1/65‑48 (MQ=255)                                                ggTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgt                  <  1:1350944‑M1/65‑48 (MQ=255)                                                ggTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgt                  <  1:1109514‑M1/65‑48 (MQ=255)                                                ggTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgt                  <  1:3125021‑M1/65‑48 (MQ=255)                                                 gTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgta                 >  1:808866‑M1/1‑17 (MQ=255)                                                 gTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgta                 >  1:1049955‑M1/1‑17 (MQ=255)                                                 gTAGAGGAAAGCGCTAAataataatcaattgttaaattattgcgcatttcactactggaactgta                 >  1:1892049‑M1/1‑17 (MQ=255)                                                  tAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaa                <  1:1423620‑M1/65‑50 (MQ=255)                                                        aaaGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaa          >  1:407832‑M1/1‑10 (MQ=255)                                                        aaaGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaa          >  1:564452‑M1/1‑10 (MQ=255)                                                        aaaGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaa          >  1:201026‑M1/1‑10 (MQ=255)                                                        aaaGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaa          >  1:908474‑M1/1‑10 (MQ=255)                                                        aaaGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaa          >  1:954888‑M1/1‑10 (MQ=255)                                                           gTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaag       <  1:2708074‑M1/65‑59 (MQ=255)                                                           gTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaag       <  1:431078‑M1/65‑59 (MQ=255)                                                           gTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaag       <  1:2288674‑M1/65‑59 (MQ=255)                                                           gTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaag       <  1:2030995‑M1/65‑59 (MQ=255)                                                           gTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaag       <  1:1247439‑M1/65‑59 (MQ=255)                                                           gTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaag       <  1:1195381‑M1/65‑59 (MQ=255)                                                                aaataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagataga  <  1:2396163‑M1/65‑64 (MQ=255)                                                                aaataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagataga  <  1:1582062‑M1/65‑64 (MQ=255)                                                                 |                                                                GCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT  >  NC_000913/1299434‑1299561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.