New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	50 (1.340)	24/120	0.1	100%	intergenic (+253/‑33)	ychE/insH21	putative inner membrane protein/IS5 transposase and trans‑activator
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+151/‑484)	insH21/oppA	IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein

TGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACA  >  NC_000913/1300635‑1300762                                                                |                                                                 ttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaat                                                                 <  1:3248144‑M2/2‑1 (MQ=255) ttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaat                                                                 <  1:2565392‑M2/2‑1 (MQ=255) aggctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaat                                                                 <  1:1467773‑M2/2‑1 (MQ=255)  tgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaata                                                                <  1:247609‑M2/3‑1 (MQ=255)        agaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATc                                                          >  1:710037‑M2/57‑65 (MQ=255)          aataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCaa                                                        >  1:68306‑M2/55‑65 (MQ=255)          aataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCaa                                                        >  1:2414622‑M2/55‑65 (MQ=255)           ataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAAt                                                       <  1:289441‑M2/12‑1 (MQ=255)              attgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGt                                                    <  1:2801571‑M2/15‑1 (MQ=255)              attgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGt                                                    <  1:1173442‑M2/15‑1 (MQ=255)                tgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTa                                                  >  1:2208591‑M2/49‑65 (MQ=255)                 gaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTaa                                                 <  1:2073072‑M2/18‑1 (MQ=255)                    atgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAatt                                              <  1:3058418‑M2/21‑1 (MQ=255)                     tgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAatta                                             >  1:2337355‑M2/44‑65 (MQ=255)                     tgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAatta                                             >  1:2306658‑M2/44‑65 (MQ=255)                     tgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAatta                                             >  1:2211360‑M2/44‑65 (MQ=255)                      gatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAattat                                            <  1:681366‑M2/23‑1 (MQ=255)                        tattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATtg                                          >  1:1856147‑M2/41‑65 (MQ=255)                            attaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCa                                      >  1:2572342‑M2/37‑65 (MQ=255)                            attaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCa                                      >  1:70670‑M2/37‑65 (MQ=255)                             ttaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCAt                                     >  1:1234370‑M2/36‑65 (MQ=255)                              taattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCAtt                                    <  1:62708‑M2/31‑1 (MQ=255)                              taattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCAtt                                    <  1:855591‑M2/31‑1 (MQ=255)                              taattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCAtt                                    <  1:3117330‑M2/31‑1 (MQ=255)                                 ttccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCa                                 >  1:18241‑M2/32‑65 (MQ=255)                                  tccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCac                                >  1:683900‑M2/31‑65 (MQ=255)                                   ccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCact                               >  1:1446724‑M2/30‑65 (MQ=255)                                           tttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAAc                       <  1:1032643‑M2/44‑1 (MQ=255)                                              ggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGt                    <  1:2405417‑M2/47‑1 (MQ=255)                                              ggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGt                    <  1:1350944‑M2/47‑1 (MQ=255)                                              ggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGt                    <  1:2429126‑M2/47‑1 (MQ=255)                                              ggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGt                    <  1:3125021‑M2/47‑1 (MQ=255)                                              ggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGt                    <  1:1400088‑M2/47‑1 (MQ=255)                                              ggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGt                    <  1:1802903‑M2/47‑1 (MQ=255)                                              ggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGt                    <  1:1109514‑M2/47‑1 (MQ=255)                                               gtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTa                   >  1:808866‑M2/18‑65 (MQ=255)                                               gtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTa                   >  1:1049955‑M2/18‑65 (MQ=255)                                               gtagaggaaagcgctaaATAATAATCAATTGTTAAATTATTGCGCATTTCACTACTGGAACTGTa                   >  1:1892049‑M2/18‑65 (MQ=255)                                                tagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTaa                  <  1:1423620‑M2/49‑1 (MQ=255)                                                      aaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGaa            >  1:954888‑M2/11‑65 (MQ=255)                                                      aaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGaa            >  1:908474‑M2/11‑65 (MQ=255)                                                      aaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGaa            >  1:407832‑M2/11‑65 (MQ=255)                                                      aaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGaa            >  1:201026‑M2/11‑65 (MQ=255)                                                      aaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGaa            >  1:564452‑M2/11‑65 (MQ=255)                                                         gtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAg         <  1:2030995‑M2/58‑1 (MQ=255)                                                         gtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAg         <  1:1195381‑M2/58‑1 (MQ=255)                                                         gtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAg         <  1:1247439‑M2/58‑1 (MQ=255)                                                         gtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAg         <  1:2708074‑M2/58‑1 (MQ=255)                                                         gtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAg         <  1:431078‑M2/58‑1 (MQ=255)                                                         gtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAg         <  1:2288674‑M2/58‑1 (MQ=255)                                                              aaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGa    <  1:1582062‑M2/63‑1 (MQ=255)                                                              aaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGa    <  1:2396163‑M2/63‑1 (MQ=255)                                                                ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACa  >  1:491045/1‑65 (MQ=255)                                                                ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACa  >  1:432492/1‑65 (MQ=255)                                                                ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACa  >  1:1504315/1‑65 (MQ=255)                                                                ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACa  >  1:2341269/1‑65 (MQ=255)                                                                ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACa  >  1:2430739/1‑65 (MQ=255)                                                                |                                                                 TGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACA  >  NC_000913/1300635‑1300762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.